miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 3' -61.3 NC_003521.1 + 15247 0.76 0.29642
Target:  5'- gCCGCCgaGCGCCaGGacgaCAcGGGUCCCCg -3'
miRNA:   3'- -GGUGGa-CGCGGcCCa---GUaCCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 15646 0.66 0.834166
Target:  5'- gCCAUCUucgagcggcagcacaGCGCCGaGGUgGugcgcgacUGGGUCCgCa -3'
miRNA:   3'- -GGUGGA---------------CGCGGC-CCAgU--------ACCCAGGgG- -5'
14399 3' -61.3 NC_003521.1 + 17486 0.71 0.523578
Target:  5'- gCACCgguagcgGCGCCGccGGUCAcgGcGGUUCCCg -3'
miRNA:   3'- gGUGGa------CGCGGC--CCAGUa-C-CCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 18310 0.68 0.692174
Target:  5'- uUCGCCUGUGCuUGGGacuGUGGG-CCUCg -3'
miRNA:   3'- -GGUGGACGCG-GCCCag-UACCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 21520 0.66 0.83798
Target:  5'- aCUGCCUGCccaacacGCUGGccuUCAUGGG-CCCg -3'
miRNA:   3'- -GGUGGACG-------CGGCCc--AGUACCCaGGGg -5'
14399 3' -61.3 NC_003521.1 + 23227 0.66 0.838738
Target:  5'- gCC-CCUGCugguCCGGGgcggacCcgGGGUCCUg -3'
miRNA:   3'- -GGuGGACGc---GGCCCa-----GuaCCCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 31628 0.66 0.838738
Target:  5'- gCCACCgcgGCcgacgGUgGGGUCAucUGGaGgcUCCCCg -3'
miRNA:   3'- -GGUGGa--CG-----CGgCCCAGU--ACC-C--AGGGG- -5'
14399 3' -61.3 NC_003521.1 + 36843 0.69 0.635661
Target:  5'- gCugCUGUGCCGGGUagagcaccugaCGUGGG-CCg- -3'
miRNA:   3'- gGugGACGCGGCCCA-----------GUACCCaGGgg -5'
14399 3' -61.3 NC_003521.1 + 39027 0.66 0.80723
Target:  5'- gCCGCCgaagGauuGCUGGG-CGucUGGGUgCCCa -3'
miRNA:   3'- -GGUGGa---Cg--CGGCCCaGU--ACCCAgGGG- -5'
14399 3' -61.3 NC_003521.1 + 48591 0.79 0.203088
Target:  5'- gCCACCcucccgcgGCGCCGGGUCGcaagaaacaGGGUCCgCCg -3'
miRNA:   3'- -GGUGGa-------CGCGGCCCAGUa--------CCCAGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 55653 0.66 0.815327
Target:  5'- uCCACaggUGCGCCaccucGUCGUcGGG-CCCCa -3'
miRNA:   3'- -GGUGg--ACGCGGcc---CAGUA-CCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 65431 1.13 0.001021
Target:  5'- cCCACCUGCGCCGGGUCAUGGGUCCCCg -3'
miRNA:   3'- -GGUGGACGCGGCCCAGUACCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 87710 0.7 0.596903
Target:  5'- gCCGCCUgcugccgucgcgcGCGCCcggcGGcGUgGUGGG-CCCCg -3'
miRNA:   3'- -GGUGGA-------------CGCGG----CC-CAgUACCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 87929 0.66 0.831087
Target:  5'- gCCGCC-GCGCCGGG-CAUGc-UCUUCa -3'
miRNA:   3'- -GGUGGaCGCGGCCCaGUACccAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 88613 0.66 0.831087
Target:  5'- gCCACgUGCGCCGuGaccUCGUccGGGUCacagCCCa -3'
miRNA:   3'- -GGUGgACGCGGC-Cc--AGUA--CCCAG----GGG- -5'
14399 3' -61.3 NC_003521.1 + 91105 0.8 0.168711
Target:  5'- gCGCCUGCGCC-GGUCG-GGGauUCCCCg -3'
miRNA:   3'- gGUGGACGCGGcCCAGUaCCC--AGGGG- -5'
14399 3' -61.3 NC_003521.1 + 92028 0.73 0.41986
Target:  5'- gCGgCgGCGgUGGGUCcggGGGUCCCCg -3'
miRNA:   3'- gGUgGaCGCgGCCCAGua-CCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 92163 0.67 0.781298
Target:  5'- uCCACCggcuCGCCcggGGGUCG-GGGcgaugcccuggccUCCCCu -3'
miRNA:   3'- -GGUGGac--GCGG---CCCAGUaCCC-------------AGGGG- -5'
14399 3' -61.3 NC_003521.1 + 92213 0.75 0.336526
Target:  5'- gCC-CCUGC-UCGGGUCccgGGGUCCCUc -3'
miRNA:   3'- -GGuGGACGcGGCCCAGua-CCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 92679 0.69 0.672493
Target:  5'- -aGCCUcggcgagGUGCCGGGUCccugggacacgAUGaGGUCCCa -3'
miRNA:   3'- ggUGGA-------CGCGGCCCAG-----------UAC-CCAGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.