miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 3' -61.3 NC_003521.1 + 194152 0.67 0.762215
Target:  5'- uCCACCUcgGCGggcgguuccaucgcCCGGGUUagGGGUUCUg -3'
miRNA:   3'- -GGUGGA--CGC--------------GGCCCAGuaCCCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 36843 0.69 0.635661
Target:  5'- gCugCUGUGCCGGGUagagcaccugaCGUGGG-CCg- -3'
miRNA:   3'- gGugGACGCGGCCCA-----------GUACCCaGGgg -5'
14399 3' -61.3 NC_003521.1 + 177983 0.69 0.654578
Target:  5'- aCCACCU--GCCGGGUCAgagagcGGGccaugCCCa -3'
miRNA:   3'- -GGUGGAcgCGGCCCAGUa-----CCCa----GGGg -5'
14399 3' -61.3 NC_003521.1 + 92679 0.69 0.672493
Target:  5'- -aGCCUcggcgagGUGCCGGGUCccugggacacgAUGaGGUCCCa -3'
miRNA:   3'- ggUGGA-------CGCGGCCCAG-----------UAC-CCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 106486 0.69 0.682822
Target:  5'- gCAUCgGCGgCGGG----GGGUCCCCg -3'
miRNA:   3'- gGUGGaCGCgGCCCaguaCCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 18310 0.68 0.692174
Target:  5'- uUCGCCUGUGCuUGGGacuGUGGG-CCUCg -3'
miRNA:   3'- -GGUGGACGCG-GCCCag-UACCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 226843 0.68 0.692174
Target:  5'- cCCGCCgccGCGCCGGGcaggcccaUCAgGGcGUCCa- -3'
miRNA:   3'- -GGUGGa--CGCGGCCC--------AGUaCC-CAGGgg -5'
14399 3' -61.3 NC_003521.1 + 153077 0.68 0.701484
Target:  5'- gCCGCCgggGC-CCGGG-CcgGGGcCCaCCa -3'
miRNA:   3'- -GGUGGa--CGcGGCCCaGuaCCCaGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 223469 0.68 0.719946
Target:  5'- gCCGCC-GCGCCGGcGUCAc-GG-CCCg -3'
miRNA:   3'- -GGUGGaCGCGGCC-CAGUacCCaGGGg -5'
14399 3' -61.3 NC_003521.1 + 214806 0.69 0.626195
Target:  5'- aCCGCCgucggGCGCCGGGcgCGgcgacgGcGGUUCCa -3'
miRNA:   3'- -GGUGGa----CGCGGCCCa-GUa-----C-CCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 183989 0.7 0.588432
Target:  5'- uCCGCCUGauagGCCGcGUgGUGGGUuagacguucccaCCCCg -3'
miRNA:   3'- -GGUGGACg---CGGCcCAgUACCCA------------GGGG- -5'
14399 3' -61.3 NC_003521.1 + 188773 0.71 0.532697
Target:  5'- gUCAUCUGcCGCUGcugcucGUC-UGGGUCCCCg -3'
miRNA:   3'- -GGUGGAC-GCGGCc-----CAGuACCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 91105 0.8 0.168711
Target:  5'- gCGCCUGCGCC-GGUCG-GGGauUCCCCg -3'
miRNA:   3'- gGUGGACGCGGcCCAGUaCCC--AGGGG- -5'
14399 3' -61.3 NC_003521.1 + 138035 0.75 0.329575
Target:  5'- gCUGCCgGCGCaCGGGgcuGUGGGUCgCCCg -3'
miRNA:   3'- -GGUGGaCGCG-GCCCag-UACCCAG-GGG- -5'
14399 3' -61.3 NC_003521.1 + 92213 0.75 0.336526
Target:  5'- gCC-CCUGC-UCGGGUCccgGGGUCCCUc -3'
miRNA:   3'- -GGuGGACGcGGCCCAGua-CCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 154955 0.75 0.360951
Target:  5'- aCCGCgaGCGCCuGGUgcccugcaucaucugCGUGGGcUCCCCg -3'
miRNA:   3'- -GGUGgaCGCGGcCCA---------------GUACCC-AGGGG- -5'
14399 3' -61.3 NC_003521.1 + 129829 0.74 0.388128
Target:  5'- gCCGCCUGCuGCUGGGgccCGUGGccGUgCCCu -3'
miRNA:   3'- -GGUGGACG-CGGCCCa--GUACC--CAgGGG- -5'
14399 3' -61.3 NC_003521.1 + 145625 0.74 0.403797
Target:  5'- gCACCcgGUGCCGGG-CGUGGaGUUCCg -3'
miRNA:   3'- gGUGGa-CGCGGCCCaGUACC-CAGGGg -5'
14399 3' -61.3 NC_003521.1 + 92028 0.73 0.41986
Target:  5'- gCGgCgGCGgUGGGUCcggGGGUCCCCg -3'
miRNA:   3'- gGUgGaCGCgGCCCAGua-CCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 17486 0.71 0.523578
Target:  5'- gCACCgguagcgGCGCCGccGGUCAcgGcGGUUCCCg -3'
miRNA:   3'- gGUGGa------CGCGGC--CCAGUa-C-CCAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.