miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
144 3' -59.3 AC_000006.1 + 23599 0.66 0.385974
Target:  5'- --cGCGCUGGCUugguacccgCGACCcccaGGCCC-UGGa -3'
miRNA:   3'- gcaCGUGACCGG---------GCUGG----CUGGGuACC- -5'
144 3' -59.3 AC_000006.1 + 15869 0.67 0.343105
Target:  5'- gGUGCACgcguguugcGGCCCGGCaCGG-CgGUGGu -3'
miRNA:   3'- gCACGUGa--------CCGGGCUG-GCUgGgUACC- -5'
144 3' -59.3 AC_000006.1 + 22647 0.68 0.303775
Target:  5'- uCGUGCuCcGGCggauagCGcGCCGACCCGUGGc -3'
miRNA:   3'- -GCACGuGaCCGg-----GC-UGGCUGGGUACC- -5'
144 3' -59.3 AC_000006.1 + 20757 0.69 0.254677
Target:  5'- gCGUGCACUGGCUCGccuucgGCUGgaACCCGc-- -3'
miRNA:   3'- -GCACGUGACCGGGC------UGGC--UGGGUacc -5'
144 3' -59.3 AC_000006.1 + 15611 0.7 0.206748
Target:  5'- gCGUGCGC-GuGCCCGugCGcACCCGUc- -3'
miRNA:   3'- -GCACGUGaC-CGGGCugGC-UGGGUAcc -5'
144 3' -59.3 AC_000006.1 + 20940 0.72 0.171405
Target:  5'- cCGUGCAggGGCCCGACuCGccGCCUgcGGa -3'
miRNA:   3'- -GCACGUgaCCGGGCUG-GC--UGGGuaCC- -5'
144 3' -59.3 AC_000006.1 + 15507 0.72 0.176102
Target:  5'- --cGCAUcaUGGCCCGG-CGGCCCGUGc -3'
miRNA:   3'- gcaCGUG--ACCGGGCUgGCUGGGUACc -5'
144 3' -59.3 AC_000006.1 + 8269 0.73 0.133947
Target:  5'- -cUGCGCggGGCCaCGACCGugCCGcGGu -3'
miRNA:   3'- gcACGUGa-CCGG-GCUGGCugGGUaCC- -5'
144 3' -59.3 AC_000006.1 + 20999 1.1 0.000211
Target:  5'- uCGUGCACUGGCCCGACCGACCCAUGGa -3'
miRNA:   3'- -GCACGUGACCGGGCUGGCUGGGUACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.