miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 106237 0.67 0.894228
Target:  5'- cCAGCGAGguGGggaUCUUGCGCucccgugacaGCCa -3'
miRNA:   3'- -GUUGCUCguCC---AGAGCGCGuag-------CGGa -5'
14421 3' -56.8 NC_003521.1 + 129106 0.67 0.895505
Target:  5'- gAugGuGCccucgaAGGUCUCGCGCAgguaCGUCa -3'
miRNA:   3'- gUugCuCG------UCCAGAGCGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 124097 0.67 0.895505
Target:  5'- aCGGCGugGGCGGGaagcaGCGCGUCGCUg -3'
miRNA:   3'- -GUUGC--UCGUCCagag-CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 144989 0.67 0.9078
Target:  5'- cCAGCG-GCaugccaccgAGGcCUCGCGCGccgacaUCGCCg -3'
miRNA:   3'- -GUUGCuCG---------UCCaGAGCGCGU------AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 135336 0.67 0.913617
Target:  5'- --uCGGGCGGGUUgccucccuccCGCGCG-CGCCg -3'
miRNA:   3'- guuGCUCGUCCAGa---------GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 132774 0.67 0.913617
Target:  5'- --cCGAGCuGGUCcgUCGCGuCAUccCGCCg -3'
miRNA:   3'- guuGCUCGuCCAG--AGCGC-GUA--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 210184 0.68 0.875453
Target:  5'- uGACGAGCAGG---CGCGC--CGCCg -3'
miRNA:   3'- gUUGCUCGUCCagaGCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 36713 0.68 0.875453
Target:  5'- --cCGAGCAGGUggagGCGCAguggCGCCa -3'
miRNA:   3'- guuGCUCGUCCAgag-CGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 106309 0.68 0.875453
Target:  5'- aGGCG-GCGGccg-UGCGCAUCGCCUg -3'
miRNA:   3'- gUUGCuCGUCcagaGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 191517 0.68 0.875453
Target:  5'- gAACGcGGUAGGUC-CGCGgAccuUCGCCa -3'
miRNA:   3'- gUUGC-UCGUCCAGaGCGCgU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 105304 0.68 0.875453
Target:  5'- uGGCGGGCguGGGgacgCcgCGCGaCGUCGCCg -3'
miRNA:   3'- gUUGCUCG--UCCa---Ga-GCGC-GUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 14386 0.68 0.853565
Target:  5'- gGACGAGCuggcgcgcuacGGcGUgUCGCGCucggagAUCGCCUa -3'
miRNA:   3'- gUUGCUCG-----------UC-CAgAGCGCG------UAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 138630 0.68 0.875453
Target:  5'- gGAC-AGCGGGUCg-GCGaaaGUCGCCa -3'
miRNA:   3'- gUUGcUCGUCCAGagCGCg--UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 121787 0.68 0.860316
Target:  5'- -cACGGGCAGGUggcgguaCUUGCGC-UCgGCCg -3'
miRNA:   3'- guUGCUCGUCCA-------GAGCGCGuAG-CGGa -5'
14421 3' -56.8 NC_003521.1 + 88721 0.68 0.861057
Target:  5'- --uUGAGaCGGGUCUCcucgcagagccgGCGCAcgUCGCCg -3'
miRNA:   3'- guuGCUC-GUCCAGAG------------CGCGU--AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 232374 0.68 0.861057
Target:  5'- -cGCGaAGCGGagguccaccGUCUCGCGCuggcugCGCCUg -3'
miRNA:   3'- guUGC-UCGUC---------CAGAGCGCGua----GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 222101 0.68 0.875453
Target:  5'- gCAGCGccGGCAGcGUCUCGagGCGcugCGCCg -3'
miRNA:   3'- -GUUGC--UCGUC-CAGAGCg-CGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 22470 0.68 0.882347
Target:  5'- uGGCGAGCGGGUg--GCGCuAUCGCa- -3'
miRNA:   3'- gUUGCUCGUCCAgagCGCG-UAGCGga -5'
14421 3' -56.8 NC_003521.1 + 87574 0.68 0.882347
Target:  5'- uGACGGGCAGG-CgggUGCGCA-CGCg- -3'
miRNA:   3'- gUUGCUCGUCCaGa--GCGCGUaGCGga -5'
14421 3' -56.8 NC_003521.1 + 222161 0.68 0.882347
Target:  5'- gCAGCGcccccguggccAGCAGGUC-CGUGCGgccccaCGCCa -3'
miRNA:   3'- -GUUGC-----------UCGUCCAGaGCGCGUa-----GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.