miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 46888 0.66 0.939342
Target:  5'- aGGCGaAGUGGGUgUCGgGCAcUCGUCg -3'
miRNA:   3'- gUUGC-UCGUCCAgAGCgCGU-AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 207321 0.66 0.939342
Target:  5'- aCAGgGAuaGCAGGUCUUcgggggGCGCGUC-CCUc -3'
miRNA:   3'- -GUUgCU--CGUCCAGAG------CGCGUAGcGGA- -5'
14421 3' -56.8 NC_003521.1 + 31138 0.66 0.943816
Target:  5'- uCGugGAGCAGcGUUaCGUGCucuUgGCCUa -3'
miRNA:   3'- -GUugCUCGUC-CAGaGCGCGu--AgCGGA- -5'
14421 3' -56.8 NC_003521.1 + 210359 0.66 0.929725
Target:  5'- gGAgGGGCAGGUg-CGCGuCAUCGgCa -3'
miRNA:   3'- gUUgCUCGUCCAgaGCGC-GUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 162870 0.66 0.939342
Target:  5'- cCAACGcGCAGGggcgCGCGCAgguggGCCg -3'
miRNA:   3'- -GUUGCuCGUCCaga-GCGCGUag---CGGa -5'
14421 3' -56.8 NC_003521.1 + 88170 0.66 0.939342
Target:  5'- cCAGCucGCAGGUgaCG-GCGUCGCUg -3'
miRNA:   3'- -GUUGcuCGUCCAgaGCgCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 81968 0.66 0.939342
Target:  5'- aGGCu-GCAGGUCUCGCGguagaGCCa -3'
miRNA:   3'- gUUGcuCGUCCAGAGCGCguag-CGGa -5'
14421 3' -56.8 NC_003521.1 + 106271 0.66 0.939342
Target:  5'- gGACGAGC------UGCGCAUCGCCg -3'
miRNA:   3'- gUUGCUCGuccagaGCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 126381 0.66 0.939342
Target:  5'- uGACGuucucGCGGGUCUgGUGC--CGCCa -3'
miRNA:   3'- gUUGCu----CGUCCAGAgCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 176292 0.66 0.92458
Target:  5'- aGACGGGCgucGGcGUCgUCGCGCAacaUgGCCUu -3'
miRNA:   3'- gUUGCUCG---UC-CAG-AGCGCGU---AgCGGA- -5'
14421 3' -56.8 NC_003521.1 + 28589 0.67 0.913617
Target:  5'- gGACG-GCGGG-CUgcUGCGCAcCGCCa -3'
miRNA:   3'- gUUGCuCGUCCaGA--GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 132774 0.67 0.913617
Target:  5'- --cCGAGCuGGUCcgUCGCGuCAUccCGCCg -3'
miRNA:   3'- guuGCUCGuCCAG--AGCGC-GUA--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 59223 0.67 0.913617
Target:  5'- uCAGCGAGCAuGUCUUuaggGCGCAcggcaGCCa -3'
miRNA:   3'- -GUUGCUCGUcCAGAG----CGCGUag---CGGa -5'
14421 3' -56.8 NC_003521.1 + 18972 0.67 0.913617
Target:  5'- aCGAgGAGgGGGUCgaggaCGCGCcgCGCg- -3'
miRNA:   3'- -GUUgCUCgUCCAGa----GCGCGuaGCGga -5'
14421 3' -56.8 NC_003521.1 + 113920 0.67 0.887049
Target:  5'- gAGCGAGCcagguuagagaagaGGGUCUCG-GCGUCGaCa -3'
miRNA:   3'- gUUGCUCG--------------UCCAGAGCgCGUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 106237 0.67 0.894228
Target:  5'- cCAGCGAGguGGggaUCUUGCGCucccgugacaGCCa -3'
miRNA:   3'- -GUUGCUCguCC---AGAGCGCGuag-------CGGa -5'
14421 3' -56.8 NC_003521.1 + 129106 0.67 0.895505
Target:  5'- gAugGuGCccucgaAGGUCUCGCGCAgguaCGUCa -3'
miRNA:   3'- gUugCuCG------UCCAGAGCGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 124097 0.67 0.895505
Target:  5'- aCGGCGugGGCGGGaagcaGCGCGUCGCUg -3'
miRNA:   3'- -GUUGC--UCGUCCagag-CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 144989 0.67 0.9078
Target:  5'- cCAGCG-GCaugccaccgAGGcCUCGCGCGccgacaUCGCCg -3'
miRNA:   3'- -GUUGCuCG---------UCCaGAGCGCGU------AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 135336 0.67 0.913617
Target:  5'- --uCGGGCGGGUUgccucccuccCGCGCG-CGCCg -3'
miRNA:   3'- guuGCUCGUCCAGa---------GCGCGUaGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.