miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 75015 1.08 0.004684
Target:  5'- gCAACGAGCAGGUCUCGCGCAUCGCCUg -3'
miRNA:   3'- -GUUGCUCGUCCAGAGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 81968 0.66 0.939342
Target:  5'- aGGCu-GCAGGUCUCGCGguagaGCCa -3'
miRNA:   3'- gUUGcuCGUCCAGAGCGCguag-CGGa -5'
14421 3' -56.8 NC_003521.1 + 84824 0.73 0.614365
Target:  5'- -uACGGGCAG--CUCGCGCAgCGCCUc -3'
miRNA:   3'- guUGCUCGUCcaGAGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 84910 0.68 0.853565
Target:  5'- uCAGCGcccgguccAGCAGGgccguaucCUCGUGCAgCGCCUu -3'
miRNA:   3'- -GUUGC--------UCGUCCa-------GAGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 86661 0.69 0.838021
Target:  5'- cCGACGA-CAGGUUgaggaucaGCGCGUCGUCg -3'
miRNA:   3'- -GUUGCUcGUCCAGag------CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 87574 0.68 0.882347
Target:  5'- uGACGGGCAGG-CgggUGCGCA-CGCg- -3'
miRNA:   3'- gUUGCUCGUCCaGa--GCGCGUaGCGga -5'
14421 3' -56.8 NC_003521.1 + 88170 0.66 0.939342
Target:  5'- cCAGCucGCAGGUgaCG-GCGUCGCUg -3'
miRNA:   3'- -GUUGcuCGUCCAgaGCgCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 88721 0.68 0.861057
Target:  5'- --uUGAGaCGGGUCUCcucgcagagccgGCGCAcgUCGCCg -3'
miRNA:   3'- guuGCUC-GUCCAGAG------------CGCGU--AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 90897 0.66 0.948068
Target:  5'- aCGACGAGgAGGg--CGCGuUAUCGuCCUc -3'
miRNA:   3'- -GUUGCUCgUCCagaGCGC-GUAGC-GGA- -5'
14421 3' -56.8 NC_003521.1 + 95063 0.71 0.722506
Target:  5'- ---aGAGCAGGUCgcucagguagUCGCGCAggggcucgggCGCCUu -3'
miRNA:   3'- guugCUCGUCCAG----------AGCGCGUa---------GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 95431 0.68 0.867634
Target:  5'- uCGAUGAGCAGGcCcaggccgUCGCGCAccggcucgCGCCc -3'
miRNA:   3'- -GUUGCUCGUCCaG-------AGCGCGUa-------GCGGa -5'
14421 3' -56.8 NC_003521.1 + 103561 0.66 0.939342
Target:  5'- uGACGGGgccCAGGUCgccCGCGCAgaaGCUg -3'
miRNA:   3'- gUUGCUC---GUCCAGa--GCGCGUag-CGGa -5'
14421 3' -56.8 NC_003521.1 + 105304 0.68 0.875453
Target:  5'- uGGCGGGCguGGGgacgCcgCGCGaCGUCGCCg -3'
miRNA:   3'- gUUGCUCG--UCCa---Ga-GCGC-GUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 106237 0.67 0.894228
Target:  5'- cCAGCGAGguGGggaUCUUGCGCucccgugacaGCCa -3'
miRNA:   3'- -GUUGCUCguCC---AGAGCGCGuag-------CGGa -5'
14421 3' -56.8 NC_003521.1 + 106271 0.66 0.939342
Target:  5'- gGACGAGC------UGCGCAUCGCCg -3'
miRNA:   3'- gUUGCUCGuccagaGCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 106309 0.68 0.875453
Target:  5'- aGGCG-GCGGccg-UGCGCAUCGCCUg -3'
miRNA:   3'- gUUGCuCGUCcagaGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 110361 0.73 0.634202
Target:  5'- ---aGAGCAGGagcgCUgGCGCGUCGUCg -3'
miRNA:   3'- guugCUCGUCCa---GAgCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 110759 0.66 0.929725
Target:  5'- cCAGCGAgaGCAGGcCgcggagaCGUGCGUgGCCa -3'
miRNA:   3'- -GUUGCU--CGUCCaGa------GCGCGUAgCGGa -5'
14421 3' -56.8 NC_003521.1 + 112369 0.66 0.947653
Target:  5'- gCGGCGGcuGCGGcGUCUCguccaccuggcugGCGCAgugCGCCg -3'
miRNA:   3'- -GUUGCU--CGUC-CAGAG-------------CGCGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 113920 0.67 0.887049
Target:  5'- gAGCGAGCcagguuagagaagaGGGUCUCG-GCGUCGaCa -3'
miRNA:   3'- gUUGCUCG--------------UCCAGAGCgCGUAGCgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.