miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 6703 0.69 0.80488
Target:  5'- -cGCGAGCgcugcuGGGUCUCGCcgugguGCAggGCCUg -3'
miRNA:   3'- guUGCUCG------UCCAGAGCG------CGUagCGGA- -5'
14421 3' -56.8 NC_003521.1 + 14386 0.68 0.853565
Target:  5'- gGACGAGCuggcgcgcuacGGcGUgUCGCGCucggagAUCGCCUa -3'
miRNA:   3'- gUUGCUCG-----------UC-CAgAGCGCG------UAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 18972 0.67 0.913617
Target:  5'- aCGAgGAGgGGGUCgaggaCGCGCcgCGCg- -3'
miRNA:   3'- -GUUgCUCgUCCAGa----GCGCGuaGCGga -5'
14421 3' -56.8 NC_003521.1 + 22470 0.68 0.882347
Target:  5'- uGGCGAGCGGGUg--GCGCuAUCGCa- -3'
miRNA:   3'- gUUGCUCGUCCAgagCGCG-UAGCGga -5'
14421 3' -56.8 NC_003521.1 + 28589 0.67 0.913617
Target:  5'- gGACG-GCGGG-CUgcUGCGCAcCGCCa -3'
miRNA:   3'- gUUGCuCGUCCaGA--GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 30233 0.71 0.732062
Target:  5'- uGGCGucgcgcuGCAGGUC-CGCGCGgUUGCCg -3'
miRNA:   3'- gUUGCu------CGUCCAGaGCGCGU-AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 31138 0.66 0.943816
Target:  5'- uCGugGAGCAGcGUUaCGUGCucuUgGCCUa -3'
miRNA:   3'- -GUugCUCGUC-CAGaGCGCGu--AgCGGA- -5'
14421 3' -56.8 NC_003521.1 + 36713 0.68 0.875453
Target:  5'- --cCGAGCAGGUggagGCGCAguggCGCCa -3'
miRNA:   3'- guuGCUCGUCCAgag-CGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 44245 0.67 0.9078
Target:  5'- uGGCGAGCAGG--UCGgGCGUCGg-- -3'
miRNA:   3'- gUUGCUCGUCCagAGCgCGUAGCgga -5'
14421 3' -56.8 NC_003521.1 + 46888 0.66 0.939342
Target:  5'- aGGCGaAGUGGGUgUCGgGCAcUCGUCg -3'
miRNA:   3'- gUUGC-UCGUCCAgAGCgCGU-AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 51504 0.66 0.934646
Target:  5'- uGAUGAGCAgGGUCUUcgggGC-CAUCGUCg -3'
miRNA:   3'- gUUGCUCGU-CCAGAG----CGcGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 53399 0.76 0.470502
Target:  5'- gCGGCGAGCAGGggaUgGCGCGUCGgCa -3'
miRNA:   3'- -GUUGCUCGUCCag-AgCGCGUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 56142 0.66 0.943816
Target:  5'- gGGCGAGUGcGG-CUCGUGCugcUCGCUg -3'
miRNA:   3'- gUUGCUCGU-CCaGAGCGCGu--AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 56198 0.71 0.722506
Target:  5'- uGACGGcGCAGGUCUguaCGCGCA-CGCa- -3'
miRNA:   3'- gUUGCU-CGUCCAGA---GCGCGUaGCGga -5'
14421 3' -56.8 NC_003521.1 + 57236 0.74 0.545671
Target:  5'- aGGCGAGCGGcUCUCGCGCG--GCCa -3'
miRNA:   3'- gUUGCUCGUCcAGAGCGCGUagCGGa -5'
14421 3' -56.8 NC_003521.1 + 59223 0.67 0.913617
Target:  5'- uCAGCGAGCAuGUCUUuaggGCGCAcggcaGCCa -3'
miRNA:   3'- -GUUGCUCGUcCAGAG----CGCGUag---CGGa -5'
14421 3' -56.8 NC_003521.1 + 60137 0.72 0.697339
Target:  5'- gAGCGAggaggugucgagcacGCAGGcCUCGCGCcaaCGCCUg -3'
miRNA:   3'- gUUGCU---------------CGUCCaGAGCGCGua-GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 72546 0.66 0.948068
Target:  5'- gCGGCGAcGguGucgucGUCUCGCgaccucucaGCGUCGCCa -3'
miRNA:   3'- -GUUGCU-CguC-----CAGAGCG---------CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 74586 0.66 0.948068
Target:  5'- gCGGCGGcGCGGcGUCccgcggccggCGCGCcUCGCCg -3'
miRNA:   3'- -GUUGCU-CGUC-CAGa---------GCGCGuAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 74817 0.77 0.376623
Target:  5'- cCGACGAGCAGG-CUCGCGUguuUUGUCUg -3'
miRNA:   3'- -GUUGCUCGUCCaGAGCGCGu--AGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.