miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 236140 0.7 0.778455
Target:  5'- gGACGGGgGGGaCcgCGCGaCGUCGCCg -3'
miRNA:   3'- gUUGCUCgUCCaGa-GCGC-GUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 233353 0.66 0.929725
Target:  5'- cCGGCGAGCcugcuGGaUC-CGCggauGCGUCGCCg -3'
miRNA:   3'- -GUUGCUCGu----CC-AGaGCG----CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 232374 0.68 0.861057
Target:  5'- -cGCGaAGCGGagguccaccGUCUCGCGCuggcugCGCCUg -3'
miRNA:   3'- guUGC-UCGUC---------CAGAGCGCGua----GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 223728 0.67 0.900528
Target:  5'- aCGACG-GCGGGUCcgguggcgggaaCGUGgGUCGCCg -3'
miRNA:   3'- -GUUGCuCGUCCAGa-----------GCGCgUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 222161 0.68 0.882347
Target:  5'- gCAGCGcccccguggccAGCAGGUC-CGUGCGgccccaCGCCa -3'
miRNA:   3'- -GUUGC-----------UCGUCCAGaGCGCGUa-----GCGGa -5'
14421 3' -56.8 NC_003521.1 + 222101 0.68 0.875453
Target:  5'- gCAGCGccGGCAGcGUCUCGagGCGcugCGCCg -3'
miRNA:   3'- -GUUGC--UCGUC-CAGAGCg-CGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 215001 0.66 0.934646
Target:  5'- gAGCcAGCGGcGUCUCGUaacGCAcCGCCa -3'
miRNA:   3'- gUUGcUCGUC-CAGAGCG---CGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 214320 0.66 0.929725
Target:  5'- gCAGCGuGguGGUgaagaGCGCAUCGCg- -3'
miRNA:   3'- -GUUGCuCguCCAgag--CGCGUAGCGga -5'
14421 3' -56.8 NC_003521.1 + 212672 0.71 0.732062
Target:  5'- -cGCGGGCAuGGUCgcCGC-CGUCGCCa -3'
miRNA:   3'- guUGCUCGU-CCAGa-GCGcGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 212226 0.69 0.80488
Target:  5'- -cACGuAGCGGGUgaggUCGCGC-UCGCCg -3'
miRNA:   3'- guUGC-UCGUCCAg---AGCGCGuAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 210359 0.66 0.929725
Target:  5'- gGAgGGGCAGGUg-CGCGuCAUCGgCa -3'
miRNA:   3'- gUUgCUCGUCCAgaGCGC-GUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 210184 0.68 0.875453
Target:  5'- uGACGAGCAGG---CGCGC--CGCCg -3'
miRNA:   3'- gUUGCUCGUCCagaGCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 208897 0.73 0.624281
Target:  5'- cCGAgGAGCgcgAGGUCaUCGCGCGcUGCCUg -3'
miRNA:   3'- -GUUgCUCG---UCCAG-AGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 208286 0.74 0.555365
Target:  5'- aCGACGAGCGGGUCuaUCGCGaucCGCUc -3'
miRNA:   3'- -GUUGCUCGUCCAG--AGCGCguaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 207321 0.66 0.939342
Target:  5'- aCAGgGAuaGCAGGUCUUcgggggGCGCGUC-CCUc -3'
miRNA:   3'- -GUUgCU--CGUCCAGAG------CGCGUAGcGGA- -5'
14421 3' -56.8 NC_003521.1 + 206724 0.69 0.829982
Target:  5'- gGGCG-GCGGGcUCcuaUCGCGCGauaUCGCCg -3'
miRNA:   3'- gUUGCuCGUCC-AG---AGCGCGU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 203593 0.7 0.787397
Target:  5'- gCAACGuGCAGuuga-GCGCGUCGCCg -3'
miRNA:   3'- -GUUGCuCGUCcagagCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 196352 0.67 0.91921
Target:  5'- cCAGCGcguGCAGGUagugCGUggcguuguacucGCAUCGCCg -3'
miRNA:   3'- -GUUGCu--CGUCCAga--GCG------------CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 195740 0.66 0.935125
Target:  5'- cCAGCGuaugcgccaccucacGCAGGa--CGCGCGUUGCCUg -3'
miRNA:   3'- -GUUGCu--------------CGUCCagaGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 191517 0.68 0.875453
Target:  5'- gAACGcGGUAGGUC-CGCGgAccuUCGCCa -3'
miRNA:   3'- gUUGC-UCGUCCAGaGCGCgU---AGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.