miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 22470 0.68 0.882347
Target:  5'- uGGCGAGCGGGUg--GCGCuAUCGCa- -3'
miRNA:   3'- gUUGCUCGUCCAgagCGCG-UAGCGga -5'
14421 3' -56.8 NC_003521.1 + 179066 0.69 0.845884
Target:  5'- aAGCGucAGCGGGUCgCGUGCccGUCGUCg -3'
miRNA:   3'- gUUGC--UCGUCCAGaGCGCG--UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 165010 0.69 0.845884
Target:  5'- cCAGCGAGgAGG-C-CGCG-AUCGCCg -3'
miRNA:   3'- -GUUGCUCgUCCaGaGCGCgUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 144925 0.69 0.845884
Target:  5'- --cCGAGgAGuUCaugUCGCGCGUCGCCg -3'
miRNA:   3'- guuGCUCgUCcAG---AGCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 84910 0.68 0.853565
Target:  5'- uCAGCGcccgguccAGCAGGgccguaucCUCGUGCAgCGCCUu -3'
miRNA:   3'- -GUUGC--------UCGUCCa-------GAGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 121787 0.68 0.860316
Target:  5'- -cACGGGCAGGUggcgguaCUUGCGC-UCgGCCg -3'
miRNA:   3'- guUGCUCGUCCA-------GAGCGCGuAG-CGGa -5'
14421 3' -56.8 NC_003521.1 + 88721 0.68 0.861057
Target:  5'- --uUGAGaCGGGUCUCcucgcagagccgGCGCAcgUCGCCg -3'
miRNA:   3'- guuGCUC-GUCCAGAG------------CGCGU--AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 232374 0.68 0.861057
Target:  5'- -cGCGaAGCGGagguccaccGUCUCGCGCuggcugCGCCUg -3'
miRNA:   3'- guUGC-UCGUC---------CAGAGCGCGua----GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 222101 0.68 0.875453
Target:  5'- gCAGCGccGGCAGcGUCUCGagGCGcugCGCCg -3'
miRNA:   3'- -GUUGC--UCGUC-CAGAGCg-CGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 206724 0.69 0.829982
Target:  5'- gGGCG-GCGGGcUCcuaUCGCGCGauaUCGCCg -3'
miRNA:   3'- gUUGCuCGUCC-AG---AGCGCGU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 129738 0.69 0.829982
Target:  5'- -cGCGAGCGcGUC-CGCGCcgucuUCGCCg -3'
miRNA:   3'- guUGCUCGUcCAGaGCGCGu----AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 126155 0.69 0.80488
Target:  5'- aCGGCGAaCAGGUCcugcaCGCGCA-CGCCc -3'
miRNA:   3'- -GUUGCUcGUCCAGa----GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 116579 0.75 0.495331
Target:  5'- --cCGAGCuGGUCUCGCGCggcccucccugcaaGUCGCUg -3'
miRNA:   3'- guuGCUCGuCCAGAGCGCG--------------UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 57236 0.74 0.545671
Target:  5'- aGGCGAGCGGcUCUCGCGCG--GCCa -3'
miRNA:   3'- gUUGCUCGUCcAGAGCGCGUagCGGa -5'
14421 3' -56.8 NC_003521.1 + 110361 0.73 0.634202
Target:  5'- ---aGAGCAGGagcgCUgGCGCGUCGUCg -3'
miRNA:   3'- guugCUCGUCCa---GAgCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 60137 0.72 0.697339
Target:  5'- gAGCGAggaggugucgagcacGCAGGcCUCGCGCcaaCGCCUg -3'
miRNA:   3'- gUUGCU---------------CGUCCaGAGCGCGua-GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 124875 0.71 0.732062
Target:  5'- gCGGCGgcAGCAGGcacaGCGCGUCGCCc -3'
miRNA:   3'- -GUUGC--UCGUCCagagCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 30233 0.71 0.732062
Target:  5'- uGGCGucgcgcuGCAGGUC-CGCGCGgUUGCCg -3'
miRNA:   3'- gUUGCu------CGUCCAGaGCGCGU-AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 142139 0.71 0.745302
Target:  5'- gGACGAcGCggaaaacgccaccuaAGGUCUcCGCGCAagcUCGCCg -3'
miRNA:   3'- gUUGCU-CG---------------UCCAGA-GCGCGU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 122092 0.7 0.793579
Target:  5'- gCAGCGAcuuGGUCUCGUGCGgcugcagcggcgucUCGCCg -3'
miRNA:   3'- -GUUGCUcguCCAGAGCGCGU--------------AGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.