miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 74817 0.77 0.376623
Target:  5'- cCGACGAGCAGG-CUCGCGUguuUUGUCUg -3'
miRNA:   3'- -GUUGCUCGUCCaGAGCGCGu--AGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 86661 0.69 0.838021
Target:  5'- cCGACGA-CAGGUUgaggaucaGCGCGUCGUCg -3'
miRNA:   3'- -GUUGCUcGUCCAGag------CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 14386 0.68 0.853565
Target:  5'- gGACGAGCuggcgcgcuacGGcGUgUCGCGCucggagAUCGCCUa -3'
miRNA:   3'- gUUGCUCG-----------UC-CAgAGCGCG------UAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 90897 0.66 0.948068
Target:  5'- aCGACGAGgAGGg--CGCGuUAUCGuCCUc -3'
miRNA:   3'- -GUUGCUCgUCCagaGCGC-GUAGC-GGA- -5'
14421 3' -56.8 NC_003521.1 + 84824 0.73 0.614365
Target:  5'- -uACGGGCAG--CUCGCGCAgCGCCUc -3'
miRNA:   3'- guUGCUCGUCcaGAGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 208897 0.73 0.624281
Target:  5'- cCGAgGAGCgcgAGGUCaUCGCGCGcUGCCUg -3'
miRNA:   3'- -GUUgCUCG---UCCAG-AGCGCGUaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 95063 0.71 0.722506
Target:  5'- ---aGAGCAGGUCgcucagguagUCGCGCAggggcucgggCGCCUu -3'
miRNA:   3'- guugCUCGUCCAG----------AGCGCGUa---------GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 212672 0.71 0.732062
Target:  5'- -cGCGGGCAuGGUCgcCGC-CGUCGCCa -3'
miRNA:   3'- guUGCUCGU-CCAGa-GCGcGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 236140 0.7 0.778455
Target:  5'- gGACGGGgGGGaCcgCGCGaCGUCGCCg -3'
miRNA:   3'- gUUGCUCgUCCaGa-GCGC-GUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 6703 0.69 0.80488
Target:  5'- -cGCGAGCgcugcuGGGUCUCGCcgugguGCAggGCCUg -3'
miRNA:   3'- guUGCUCG------UCCAGAGCG------CGUagCGGA- -5'
14421 3' -56.8 NC_003521.1 + 203593 0.7 0.787397
Target:  5'- gCAACGuGCAGuuga-GCGCGUCGCCg -3'
miRNA:   3'- -GUUGCuCGUCcagagCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 164546 0.7 0.769389
Target:  5'- uCGACGAccGCgAGGUCUCGCagGCGgccgugCGCCUc -3'
miRNA:   3'- -GUUGCU--CG-UCCAGAGCG--CGUa-----GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 53399 0.76 0.470502
Target:  5'- gCGGCGAGCAGGggaUgGCGCGUCGgCa -3'
miRNA:   3'- -GUUGCUCGUCCag-AgCGCGUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 176377 0.7 0.796208
Target:  5'- uCAGCGuGCggAGGUaCUCGCGCGucUCGuCCUc -3'
miRNA:   3'- -GUUGCuCG--UCCA-GAGCGCGU--AGC-GGA- -5'
14421 3' -56.8 NC_003521.1 + 208286 0.74 0.555365
Target:  5'- aCGACGAGCGGGUCuaUCGCGaucCGCUc -3'
miRNA:   3'- -GUUGCUCGUCCAG--AGCGCguaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 163682 0.7 0.760209
Target:  5'- uCAACaAGUGGGUCUCgcaGCGCAagGCCg -3'
miRNA:   3'- -GUUGcUCGUCCAGAG---CGCGUagCGGa -5'
14421 3' -56.8 NC_003521.1 + 212226 0.69 0.80488
Target:  5'- -cACGuAGCGGGUgaggUCGCGC-UCGCCg -3'
miRNA:   3'- guUGC-UCGUCCAg---AGCGCGuAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 123230 0.69 0.845884
Target:  5'- gCGGCGguAGguGGUCguaGCGCcgCGCCc -3'
miRNA:   3'- -GUUGC--UCguCCAGag-CGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 185403 0.74 0.574896
Target:  5'- aCGACGuGgAGGUCUCGUGCGUCaaCCUc -3'
miRNA:   3'- -GUUGCuCgUCCAGAGCGCGUAGc-GGA- -5'
14421 3' -56.8 NC_003521.1 + 56198 0.71 0.722506
Target:  5'- uGACGGcGCAGGUCUguaCGCGCA-CGCa- -3'
miRNA:   3'- gUUGCU-CGUCCAGA---GCGCGUaGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.