Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 75015 | 1.08 | 0.004684 |
Target: 5'- gCAACGAGCAGGUCUCGCGCAUCGCCUg -3' miRNA: 3'- -GUUGCUCGUCCAGAGCGCGUAGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 74817 | 0.77 | 0.376623 |
Target: 5'- cCGACGAGCAGG-CUCGCGUguuUUGUCUg -3' miRNA: 3'- -GUUGCUCGUCCaGAGCGCGu--AGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 53399 | 0.76 | 0.470502 |
Target: 5'- gCGGCGAGCAGGggaUgGCGCGUCGgCa -3' miRNA: 3'- -GUUGCUCGUCCag-AgCGCGUAGCgGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 116579 | 0.75 | 0.495331 |
Target: 5'- --cCGAGCuGGUCUCGCGCggcccucccugcaaGUCGCUg -3' miRNA: 3'- guuGCUCGuCCAGAGCGCG--------------UAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 57236 | 0.74 | 0.545671 |
Target: 5'- aGGCGAGCGGcUCUCGCGCG--GCCa -3' miRNA: 3'- gUUGCUCGUCcAGAGCGCGUagCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 208286 | 0.74 | 0.555365 |
Target: 5'- aCGACGAGCGGGUCuaUCGCGaucCGCUc -3' miRNA: 3'- -GUUGCUCGUCCAG--AGCGCguaGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 185403 | 0.74 | 0.574896 |
Target: 5'- aCGACGuGgAGGUCUCGUGCGUCaaCCUc -3' miRNA: 3'- -GUUGCuCgUCCAGAGCGCGUAGc-GGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 84824 | 0.73 | 0.614365 |
Target: 5'- -uACGGGCAG--CUCGCGCAgCGCCUc -3' miRNA: 3'- guUGCUCGUCcaGAGCGCGUaGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 208897 | 0.73 | 0.624281 |
Target: 5'- cCGAgGAGCgcgAGGUCaUCGCGCGcUGCCUg -3' miRNA: 3'- -GUUgCUCG---UCCAG-AGCGCGUaGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 110361 | 0.73 | 0.634202 |
Target: 5'- ---aGAGCAGGagcgCUgGCGCGUCGUCg -3' miRNA: 3'- guugCUCGUCCa---GAgCGCGUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 60137 | 0.72 | 0.697339 |
Target: 5'- gAGCGAggaggugucgagcacGCAGGcCUCGCGCcaaCGCCUg -3' miRNA: 3'- gUUGCU---------------CGUCCaGAGCGCGua-GCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 95063 | 0.71 | 0.722506 |
Target: 5'- ---aGAGCAGGUCgcucagguagUCGCGCAggggcucgggCGCCUu -3' miRNA: 3'- guugCUCGUCCAG----------AGCGCGUa---------GCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 56198 | 0.71 | 0.722506 |
Target: 5'- uGACGGcGCAGGUCUguaCGCGCA-CGCa- -3' miRNA: 3'- gUUGCU-CGUCCAGA---GCGCGUaGCGga -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 124875 | 0.71 | 0.732062 |
Target: 5'- gCGGCGgcAGCAGGcacaGCGCGUCGCCc -3' miRNA: 3'- -GUUGC--UCGUCCagagCGCGUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 212672 | 0.71 | 0.732062 |
Target: 5'- -cGCGGGCAuGGUCgcCGC-CGUCGCCa -3' miRNA: 3'- guUGCUCGU-CCAGa-GCGcGUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 30233 | 0.71 | 0.732062 |
Target: 5'- uGGCGucgcgcuGCAGGUC-CGCGCGgUUGCCg -3' miRNA: 3'- gUUGCu------CGUCCAGaGCGCGU-AGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 142139 | 0.71 | 0.745302 |
Target: 5'- gGACGAcGCggaaaacgccaccuaAGGUCUcCGCGCAagcUCGCCg -3' miRNA: 3'- gUUGCU-CG---------------UCCAGA-GCGCGU---AGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 163682 | 0.7 | 0.760209 |
Target: 5'- uCAACaAGUGGGUCUCgcaGCGCAagGCCg -3' miRNA: 3'- -GUUGcUCGUCCAGAG---CGCGUagCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 164546 | 0.7 | 0.769389 |
Target: 5'- uCGACGAccGCgAGGUCUCGCagGCGgccgugCGCCUc -3' miRNA: 3'- -GUUGCU--CG-UCCAGAGCG--CGUa-----GCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 236140 | 0.7 | 0.778455 |
Target: 5'- gGACGGGgGGGaCcgCGCGaCGUCGCCg -3' miRNA: 3'- gUUGCUCgUCCaGa-GCGC-GUAGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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