Results 1 - 20 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 51504 | 0.66 | 0.934646 |
Target: 5'- uGAUGAGCAgGGUCUUcgggGC-CAUCGUCg -3' miRNA: 3'- gUUGCUCGU-CCAGAG----CGcGUAGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 143552 | 0.66 | 0.929725 |
Target: 5'- gCGACGAGCAGcagC-CGC-CAUCGCUg -3' miRNA: 3'- -GUUGCUCGUCca-GaGCGcGUAGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 186498 | 0.66 | 0.929725 |
Target: 5'- gGGCGAGagccccguCGGGaUCUCGgGCgguGUCGCCa -3' miRNA: 3'- gUUGCUC--------GUCC-AGAGCgCG---UAGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 233353 | 0.66 | 0.929725 |
Target: 5'- cCGGCGAGCcugcuGGaUC-CGCggauGCGUCGCCg -3' miRNA: 3'- -GUUGCUCGu----CC-AGaGCG----CGUAGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 139170 | 0.66 | 0.934164 |
Target: 5'- gGAgGAGCcGGUgUCGCGCAUguuggucugcuccUGCCc -3' miRNA: 3'- gUUgCUCGuCCAgAGCGCGUA-------------GCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 215001 | 0.66 | 0.934646 |
Target: 5'- gAGCcAGCGGcGUCUCGUaacGCAcCGCCa -3' miRNA: 3'- gUUGcUCGUC-CAGAGCG---CGUaGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 195740 | 0.66 | 0.935125 |
Target: 5'- cCAGCGuaugcgccaccucacGCAGGa--CGCGCGUUGCCUg -3' miRNA: 3'- -GUUGCu--------------CGUCCagaGCGCGUAGCGGA- -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 103561 | 0.66 | 0.939342 |
Target: 5'- uGACGGGgccCAGGUCgccCGCGCAgaaGCUg -3' miRNA: 3'- gUUGCUC---GUCCAGa--GCGCGUag-CGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 81968 | 0.66 | 0.939342 |
Target: 5'- aGGCu-GCAGGUCUCGCGguagaGCCa -3' miRNA: 3'- gUUGcuCGUCCAGAGCGCguag-CGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 214320 | 0.66 | 0.929725 |
Target: 5'- gCAGCGuGguGGUgaagaGCGCAUCGCg- -3' miRNA: 3'- -GUUGCuCguCCAgag--CGCGUAGCGga -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 121184 | 0.66 | 0.92458 |
Target: 5'- cCAGCGcgucguacuGGCGuaucuccacGGUCUCGCGCAgggCGCg- -3' miRNA: 3'- -GUUGC---------UCGU---------CCAGAGCGCGUa--GCGga -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 56142 | 0.66 | 0.943816 |
Target: 5'- gGGCGAGUGcGG-CUCGUGCugcUCGCUg -3' miRNA: 3'- gUUGCUCGU-CCaGAGCGCGu--AGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 207321 | 0.66 | 0.939342 |
Target: 5'- aCAGgGAuaGCAGGUCUUcgggggGCGCGUC-CCUc -3' miRNA: 3'- -GUUgCU--CGUCCAGAG------CGCGUAGcGGA- -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 74586 | 0.66 | 0.948068 |
Target: 5'- gCGGCGGcGCGGcGUCccgcggccggCGCGCcUCGCCg -3' miRNA: 3'- -GUUGCU-CGUC-CAGa---------GCGCGuAGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 112369 | 0.66 | 0.947653 |
Target: 5'- gCGGCGGcuGCGGcGUCUCguccaccuggcugGCGCAgugCGCCg -3' miRNA: 3'- -GUUGCU--CGUC-CAGAG-------------CGCGUa--GCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 46888 | 0.66 | 0.939342 |
Target: 5'- aGGCGaAGUGGGUgUCGgGCAcUCGUCg -3' miRNA: 3'- gUUGC-UCGUCCAgAGCgCGU-AGCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 110759 | 0.66 | 0.929725 |
Target: 5'- cCAGCGAgaGCAGGcCgcggagaCGUGCGUgGCCa -3' miRNA: 3'- -GUUGCU--CGUCCaGa------GCGCGUAgCGGa -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 176292 | 0.66 | 0.92458 |
Target: 5'- aGACGGGCgucGGcGUCgUCGCGCAacaUgGCCUu -3' miRNA: 3'- gUUGCUCG---UC-CAG-AGCGCGU---AgCGGA- -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 90897 | 0.66 | 0.948068 |
Target: 5'- aCGACGAGgAGGg--CGCGuUAUCGuCCUc -3' miRNA: 3'- -GUUGCUCgUCCagaGCGC-GUAGC-GGA- -5' |
|||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 72546 | 0.66 | 0.948068 |
Target: 5'- gCGGCGAcGguGucgucGUCUCGCgaccucucaGCGUCGCCa -3' miRNA: 3'- -GUUGCU-CguC-----CAGAGCG---------CGUAGCGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home