miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 116579 0.75 0.495331
Target:  5'- --cCGAGCuGGUCUCGCGCggcccucccugcaaGUCGCUg -3'
miRNA:   3'- guuGCUCGuCCAGAGCGCG--------------UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 116646 0.67 0.9078
Target:  5'- cCAGCcGGCAGGcgcaCagGCGCuAUCGCCUg -3'
miRNA:   3'- -GUUGcUCGUCCa---GagCGCG-UAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 121184 0.66 0.92458
Target:  5'- cCAGCGcgucguacuGGCGuaucuccacGGUCUCGCGCAgggCGCg- -3'
miRNA:   3'- -GUUGC---------UCGU---------CCAGAGCGCGUa--GCGga -5'
14421 3' -56.8 NC_003521.1 + 121787 0.68 0.860316
Target:  5'- -cACGGGCAGGUggcgguaCUUGCGC-UCgGCCg -3'
miRNA:   3'- guUGCUCGUCCA-------GAGCGCGuAG-CGGa -5'
14421 3' -56.8 NC_003521.1 + 122092 0.7 0.793579
Target:  5'- gCAGCGAcuuGGUCUCGUGCGgcugcagcggcgucUCGCCg -3'
miRNA:   3'- -GUUGCUcguCCAGAGCGCGU--------------AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 123230 0.69 0.845884
Target:  5'- gCGGCGguAGguGGUCguaGCGCcgCGCCc -3'
miRNA:   3'- -GUUGC--UCguCCAGag-CGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 124097 0.67 0.895505
Target:  5'- aCGGCGugGGCGGGaagcaGCGCGUCGCUg -3'
miRNA:   3'- -GUUGC--UCGUCCagag-CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 124875 0.71 0.732062
Target:  5'- gCGGCGgcAGCAGGcacaGCGCGUCGCCc -3'
miRNA:   3'- -GUUGC--UCGUCCagagCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 126155 0.69 0.80488
Target:  5'- aCGGCGAaCAGGUCcugcaCGCGCA-CGCCc -3'
miRNA:   3'- -GUUGCUcGUCCAGa----GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 126381 0.66 0.939342
Target:  5'- uGACGuucucGCGGGUCUgGUGC--CGCCa -3'
miRNA:   3'- gUUGCu----CGUCCAGAgCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 129106 0.67 0.895505
Target:  5'- gAugGuGCccucgaAGGUCUCGCGCAgguaCGUCa -3'
miRNA:   3'- gUugCuCG------UCCAGAGCGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 129738 0.69 0.829982
Target:  5'- -cGCGAGCGcGUC-CGCGCcgucuUCGCCg -3'
miRNA:   3'- guUGCUCGUcCAGaGCGCGu----AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 132774 0.67 0.913617
Target:  5'- --cCGAGCuGGUCcgUCGCGuCAUccCGCCg -3'
miRNA:   3'- guuGCUCGuCCAG--AGCGC-GUA--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 135336 0.67 0.913617
Target:  5'- --uCGGGCGGGUUgccucccuccCGCGCG-CGCCg -3'
miRNA:   3'- guuGCUCGUCCAGa---------GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 138630 0.68 0.875453
Target:  5'- gGAC-AGCGGGUCg-GCGaaaGUCGCCa -3'
miRNA:   3'- gUUGcUCGUCCAGagCGCg--UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 139170 0.66 0.934164
Target:  5'- gGAgGAGCcGGUgUCGCGCAUguuggucugcuccUGCCc -3'
miRNA:   3'- gUUgCUCGuCCAgAGCGCGUA-------------GCGGa -5'
14421 3' -56.8 NC_003521.1 + 142139 0.71 0.745302
Target:  5'- gGACGAcGCggaaaacgccaccuaAGGUCUcCGCGCAagcUCGCCg -3'
miRNA:   3'- gUUGCU-CG---------------UCCAGA-GCGCGU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 143552 0.66 0.929725
Target:  5'- gCGACGAGCAGcagC-CGC-CAUCGCUg -3'
miRNA:   3'- -GUUGCUCGUCca-GaGCGcGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 144925 0.69 0.845884
Target:  5'- --cCGAGgAGuUCaugUCGCGCGUCGCCg -3'
miRNA:   3'- guuGCUCgUCcAG---AGCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 144989 0.67 0.9078
Target:  5'- cCAGCG-GCaugccaccgAGGcCUCGCGCGccgacaUCGCCg -3'
miRNA:   3'- -GUUGCuCG---------UCCaGAGCGCGU------AGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.