miRNA display CGI


Results 41 - 60 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 169458 0.67 0.895505
Target:  5'- gCGGCG-GCGGGUUcgUCgccagGCGCGUCGUCg -3'
miRNA:   3'- -GUUGCuCGUCCAG--AG-----CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 129106 0.67 0.895505
Target:  5'- gAugGuGCccucgaAGGUCUCGCGCAgguaCGUCa -3'
miRNA:   3'- gUugCuCG------UCCAGAGCGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 124097 0.67 0.895505
Target:  5'- aCGGCGugGGCGGGaagcaGCGCGUCGCUg -3'
miRNA:   3'- -GUUGC--UCGUCCagag-CGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 153082 0.67 0.895505
Target:  5'- --cCGcAGCuGGUCUCGgGCuUCGUCUg -3'
miRNA:   3'- guuGC-UCGuCCAGAGCgCGuAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 106237 0.67 0.894228
Target:  5'- cCAGCGAGguGGggaUCUUGCGCucccgugacaGCCa -3'
miRNA:   3'- -GUUGCUCguCC---AGAGCGCGuag-------CGGa -5'
14421 3' -56.8 NC_003521.1 + 113920 0.67 0.887049
Target:  5'- gAGCGAGCcagguuagagaagaGGGUCUCG-GCGUCGaCa -3'
miRNA:   3'- gUUGCUCG--------------UCCAGAGCgCGUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 87574 0.68 0.882347
Target:  5'- uGACGGGCAGG-CgggUGCGCA-CGCg- -3'
miRNA:   3'- gUUGCUCGUCCaGa--GCGCGUaGCGga -5'
14421 3' -56.8 NC_003521.1 + 222161 0.68 0.882347
Target:  5'- gCAGCGcccccguggccAGCAGGUC-CGUGCGgccccaCGCCa -3'
miRNA:   3'- -GUUGC-----------UCGUCCAGaGCGCGUa-----GCGGa -5'
14421 3' -56.8 NC_003521.1 + 22470 0.68 0.882347
Target:  5'- uGGCGAGCGGGUg--GCGCuAUCGCa- -3'
miRNA:   3'- gUUGCUCGUCCAgagCGCG-UAGCGga -5'
14421 3' -56.8 NC_003521.1 + 191517 0.68 0.875453
Target:  5'- gAACGcGGUAGGUC-CGCGgAccuUCGCCa -3'
miRNA:   3'- gUUGC-UCGUCCAGaGCGCgU---AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 106309 0.68 0.875453
Target:  5'- aGGCG-GCGGccg-UGCGCAUCGCCUg -3'
miRNA:   3'- gUUGCuCGUCcagaGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 105304 0.68 0.875453
Target:  5'- uGGCGGGCguGGGgacgCcgCGCGaCGUCGCCg -3'
miRNA:   3'- gUUGCUCG--UCCa---Ga-GCGC-GUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 210184 0.68 0.875453
Target:  5'- uGACGAGCAGG---CGCGC--CGCCg -3'
miRNA:   3'- gUUGCUCGUCCagaGCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 222101 0.68 0.875453
Target:  5'- gCAGCGccGGCAGcGUCUCGagGCGcugCGCCg -3'
miRNA:   3'- -GUUGC--UCGUC-CAGAGCg-CGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 36713 0.68 0.875453
Target:  5'- --cCGAGCAGGUggagGCGCAguggCGCCa -3'
miRNA:   3'- guuGCUCGUCCAgag-CGCGUa---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 138630 0.68 0.875453
Target:  5'- gGAC-AGCGGGUCg-GCGaaaGUCGCCa -3'
miRNA:   3'- gUUGcUCGUCCAGagCGCg--UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 177902 0.68 0.868355
Target:  5'- gAACGAGCGGGgcgagCgggaGgGCGUCGUCg -3'
miRNA:   3'- gUUGCUCGUCCa----Gag--CgCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 95431 0.68 0.867634
Target:  5'- uCGAUGAGCAGGcCcaggccgUCGCGCAccggcucgCGCCc -3'
miRNA:   3'- -GUUGCUCGUCCaG-------AGCGCGUa-------GCGGa -5'
14421 3' -56.8 NC_003521.1 + 232374 0.68 0.861057
Target:  5'- -cGCGaAGCGGagguccaccGUCUCGCGCuggcugCGCCUg -3'
miRNA:   3'- guUGC-UCGUC---------CAGAGCGCGua----GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 88721 0.68 0.861057
Target:  5'- --uUGAGaCGGGUCUCcucgcagagccgGCGCAcgUCGCCg -3'
miRNA:   3'- guuGCUC-GUCCAGAG------------CGCGU--AGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.