miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 139170 0.66 0.934164
Target:  5'- gGAgGAGCcGGUgUCGCGCAUguuggucugcuccUGCCc -3'
miRNA:   3'- gUUgCUCGuCCAgAGCGCGUA-------------GCGGa -5'
14421 3' -56.8 NC_003521.1 + 143552 0.66 0.929725
Target:  5'- gCGACGAGCAGcagC-CGC-CAUCGCUg -3'
miRNA:   3'- -GUUGCUCGUCca-GaGCGcGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 110759 0.66 0.929725
Target:  5'- cCAGCGAgaGCAGGcCgcggagaCGUGCGUgGCCa -3'
miRNA:   3'- -GUUGCU--CGUCCaGa------GCGCGUAgCGGa -5'
14421 3' -56.8 NC_003521.1 + 214320 0.66 0.929725
Target:  5'- gCAGCGuGguGGUgaagaGCGCAUCGCg- -3'
miRNA:   3'- -GUUGCuCguCCAgag--CGCGUAGCGga -5'
14421 3' -56.8 NC_003521.1 + 186498 0.66 0.929725
Target:  5'- gGGCGAGagccccguCGGGaUCUCGgGCgguGUCGCCa -3'
miRNA:   3'- gUUGCUC--------GUCC-AGAGCgCG---UAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 168034 0.66 0.929725
Target:  5'- aGGCGuGCGGGUCUUGgaGCugugcCGCCg -3'
miRNA:   3'- gUUGCuCGUCCAGAGCg-CGua---GCGGa -5'
14421 3' -56.8 NC_003521.1 + 233353 0.66 0.929725
Target:  5'- cCGGCGAGCcugcuGGaUC-CGCggauGCGUCGCCg -3'
miRNA:   3'- -GUUGCUCGu----CC-AGaGCG----CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 210359 0.66 0.929725
Target:  5'- gGAgGGGCAGGUg-CGCGuCAUCGgCa -3'
miRNA:   3'- gUUgCUCGUCCAgaGCGC-GUAGCgGa -5'
14421 3' -56.8 NC_003521.1 + 121184 0.66 0.92458
Target:  5'- cCAGCGcgucguacuGGCGuaucuccacGGUCUCGCGCAgggCGCg- -3'
miRNA:   3'- -GUUGC---------UCGU---------CCAGAGCGCGUa--GCGga -5'
14421 3' -56.8 NC_003521.1 + 176292 0.66 0.92458
Target:  5'- aGACGGGCgucGGcGUCgUCGCGCAacaUgGCCUu -3'
miRNA:   3'- gUUGCUCG---UC-CAG-AGCGCGU---AgCGGA- -5'
14421 3' -56.8 NC_003521.1 + 196352 0.67 0.91921
Target:  5'- cCAGCGcguGCAGGUagugCGUggcguuguacucGCAUCGCCg -3'
miRNA:   3'- -GUUGCu--CGUCCAga--GCG------------CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 132774 0.67 0.913617
Target:  5'- --cCGAGCuGGUCcgUCGCGuCAUccCGCCg -3'
miRNA:   3'- guuGCUCGuCCAG--AGCGC-GUA--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 59223 0.67 0.913617
Target:  5'- uCAGCGAGCAuGUCUUuaggGCGCAcggcaGCCa -3'
miRNA:   3'- -GUUGCUCGUcCAGAG----CGCGUag---CGGa -5'
14421 3' -56.8 NC_003521.1 + 18972 0.67 0.913617
Target:  5'- aCGAgGAGgGGGUCgaggaCGCGCcgCGCg- -3'
miRNA:   3'- -GUUgCUCgUCCAGa----GCGCGuaGCGga -5'
14421 3' -56.8 NC_003521.1 + 28589 0.67 0.913617
Target:  5'- gGACG-GCGGG-CUgcUGCGCAcCGCCa -3'
miRNA:   3'- gUUGCuCGUCCaGA--GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 135336 0.67 0.913617
Target:  5'- --uCGGGCGGGUUgccucccuccCGCGCG-CGCCg -3'
miRNA:   3'- guuGCUCGUCCAGa---------GCGCGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 116646 0.67 0.9078
Target:  5'- cCAGCcGGCAGGcgcaCagGCGCuAUCGCCUg -3'
miRNA:   3'- -GUUGcUCGUCCa---GagCGCG-UAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 44245 0.67 0.9078
Target:  5'- uGGCGAGCAGG--UCGgGCGUCGg-- -3'
miRNA:   3'- gUUGCUCGUCCagAGCgCGUAGCgga -5'
14421 3' -56.8 NC_003521.1 + 144989 0.67 0.9078
Target:  5'- cCAGCG-GCaugccaccgAGGcCUCGCGCGccgacaUCGCCg -3'
miRNA:   3'- -GUUGCuCG---------UCCaGAGCGCGU------AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 223728 0.67 0.900528
Target:  5'- aCGACG-GCGGGUCcgguggcgggaaCGUGgGUCGCCg -3'
miRNA:   3'- -GUUGCuCGUCCAGa-----------GCGCgUAGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.