miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 93182 0.68 0.806059
Target:  5'- cCGGGGcucgacggucggaGGUGCCAGAUCCgauccCUCGCCGa -3'
miRNA:   3'- -GCUCC-------------UCGUGGUCUAGGac---GGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 136720 0.68 0.806059
Target:  5'- cCGAGGAuggcagcGCGCCGccuuccgcGUCCUGCCgCGCCc -3'
miRNA:   3'- -GCUCCU-------CGUGGUc-------UAGGACGG-GUGGc -5'
14421 5' -59.1 NC_003521.1 + 97648 0.68 0.798437
Target:  5'- uCGcGGcGGCGCCGGGUCCgaccCCCACgGg -3'
miRNA:   3'- -GCuCC-UCGUGGUCUAGGac--GGGUGgC- -5'
14421 5' -59.1 NC_003521.1 + 72435 0.68 0.798437
Target:  5'- aCGGcGGcaaCGCCAccuacAUCCUGCCCGCCGa -3'
miRNA:   3'- -GCU-CCuc-GUGGUc----UAGGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 203274 0.68 0.798436
Target:  5'- aCGAGGAGauucCGCCGcGAcCCccgcUGCCCACCc -3'
miRNA:   3'- -GCUCCUC----GUGGU-CUaGG----ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 5821 0.68 0.798436
Target:  5'- aGGGGuGGUGCCGGGUCCcGgCgACCGg -3'
miRNA:   3'- gCUCC-UCGUGGUCUAGGaCgGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 44711 0.68 0.789838
Target:  5'- cCGAGacGCGCCAGAUCCUGgugaCGCUGa -3'
miRNA:   3'- -GCUCcuCGUGGUCUAGGACgg--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 187357 0.68 0.781112
Target:  5'- -aAGGAGCGCUcgcuGGAggacgcCCUGgCCGCCGa -3'
miRNA:   3'- gcUCCUCGUGG----UCUa-----GGACgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 82679 0.68 0.772265
Target:  5'- ----aGGCACCAGAUCUUgGCCCACa- -3'
miRNA:   3'- gcuccUCGUGGUCUAGGA-CGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 39805 0.68 0.772265
Target:  5'- uCGGcGGGGCGCCGGGcggUCCU--CCGCCGa -3'
miRNA:   3'- -GCU-CCUCGUGGUCU---AGGAcgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 240032 0.68 0.772265
Target:  5'- uCGGcGGGGCGCCGGGcggUCCU--CCGCCGa -3'
miRNA:   3'- -GCU-CCUCGUGGUCU---AGGAcgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 228890 0.68 0.772265
Target:  5'- aGcAGGAGCACCAG--CCggGCCCgGCUGg -3'
miRNA:   3'- gC-UCCUCGUGGUCuaGGa-CGGG-UGGC- -5'
14421 5' -59.1 NC_003521.1 + 159958 0.68 0.771374
Target:  5'- cCGAGGAGUGCCAGcuacCCaGCCUcaagaucuucaucGCCGg -3'
miRNA:   3'- -GCUCCUCGUGGUCua--GGaCGGG-------------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 64011 0.68 0.763305
Target:  5'- aGAGGAGCugCAGGcgCUggaGCgCACCa -3'
miRNA:   3'- gCUCCUCGugGUCUa-GGa--CGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 67079 0.68 0.763305
Target:  5'- gGAGGAGCAgCAG--CCUGCCU-CUGg -3'
miRNA:   3'- gCUCCUCGUgGUCuaGGACGGGuGGC- -5'
14421 5' -59.1 NC_003521.1 + 209180 0.69 0.75424
Target:  5'- cCGGGGAGCcuCCAGAUgac-CCCACCGu -3'
miRNA:   3'- -GCUCCUCGu-GGUCUAggacGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 69522 0.69 0.75424
Target:  5'- uGAGGcccAGCACCGccuUCCaGCCCACgCGg -3'
miRNA:   3'- gCUCC---UCGUGGUcu-AGGaCGGGUG-GC- -5'
14421 5' -59.1 NC_003521.1 + 59676 0.69 0.745999
Target:  5'- gGAGGAGCucagacGCCAGGUggagcccuaccucaaCUGCCgCGCCGu -3'
miRNA:   3'- gCUCCUCG------UGGUCUAg--------------GACGG-GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 139795 0.69 0.745079
Target:  5'- --uGGAGCugCAcGggCgUGCCCGCCa -3'
miRNA:   3'- gcuCCUCGugGU-CuaGgACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 223795 0.69 0.745078
Target:  5'- cCGuGGGcCGCCAGAcgacgggCCUGCgCCGCCGc -3'
miRNA:   3'- -GCuCCUcGUGGUCUa------GGACG-GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.