miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 234589 0.66 0.861754
Target:  5'- cCGcGGGAGCGCCGGucUCCauucgGaCCGCCGu -3'
miRNA:   3'- -GC-UCCUCGUGGUCu-AGGa----CgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 115553 0.67 0.857383
Target:  5'- uGAcGGAGCGCCGugcugcgcggacguuGAUCUcGCCC-CCGu -3'
miRNA:   3'- gCU-CCUCGUGGU---------------CUAGGaCGGGuGGC- -5'
14421 5' -59.1 NC_003521.1 + 200436 0.67 0.855173
Target:  5'- gCGAGGuGCGCCAcGAcgCCgacaucguggagaagGCCCugCGc -3'
miRNA:   3'- -GCUCCuCGUGGU-CUa-GGa--------------CGGGugGC- -5'
14421 5' -59.1 NC_003521.1 + 100912 0.67 0.854432
Target:  5'- cCGAGGAGCAgC-GcgCCU-CCUACCa -3'
miRNA:   3'- -GCUCCUCGUgGuCuaGGAcGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 120563 0.67 0.854432
Target:  5'- gGGGGAGCGCCcggggauaacGGAUCCa-CCUucgGCCGg -3'
miRNA:   3'- gCUCCUCGUGG----------UCUAGGacGGG---UGGC- -5'
14421 5' -59.1 NC_003521.1 + 214288 0.67 0.846929
Target:  5'- gGAGGAG-GCCAGGa--UGCCCAUCa -3'
miRNA:   3'- gCUCCUCgUGGUCUaggACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 202605 0.67 0.846929
Target:  5'- cCGAGGccgcccuGCGCC---UCCUGCCCgACCu -3'
miRNA:   3'- -GCUCCu------CGUGGucuAGGACGGG-UGGc -5'
14421 5' -59.1 NC_003521.1 + 153151 0.67 0.846929
Target:  5'- gCGAGG-GCGUCAGGUCCUGCaggaacgacuCCACg- -3'
miRNA:   3'- -GCUCCuCGUGGUCUAGGACG----------GGUGgc -5'
14421 5' -59.1 NC_003521.1 + 2378 0.67 0.846929
Target:  5'- cCGAGGccgcccuGCGCC---UCCUGCCCgACCu -3'
miRNA:   3'- -GCUCCu------CGUGGucuAGGACGGG-UGGc -5'
14421 5' -59.1 NC_003521.1 + 111256 0.67 0.83925
Target:  5'- gCGGcGGAGCAgCCAucGUCggGCCCGCCGu -3'
miRNA:   3'- -GCU-CCUCGU-GGUc-UAGgaCGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 118894 0.67 0.83925
Target:  5'- uGAcGAGCAUgAGGUCCUcGCCCucgucggcGCCGc -3'
miRNA:   3'- gCUcCUCGUGgUCUAGGA-CGGG--------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 86313 0.67 0.831401
Target:  5'- uGAGGuuggccgccAGCACCuggaugcuggAGGUCUUGCCggCGCCGg -3'
miRNA:   3'- gCUCC---------UCGUGG----------UCUAGGACGG--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 121772 0.67 0.831401
Target:  5'- gGAGGAGCGcuCCAGcaccCCgacgccGCCCGCCc -3'
miRNA:   3'- gCUCCUCGU--GGUCua--GGa-----CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 102305 0.67 0.823388
Target:  5'- uCGAGGuGCGCCGGAcCCagcggGCCCgugaugaucaGCUGg -3'
miRNA:   3'- -GCUCCuCGUGGUCUaGGa----CGGG----------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 121484 0.67 0.823388
Target:  5'- --uGGAG-GCCGGAccCCUGCCCgACCGc -3'
miRNA:   3'- gcuCCUCgUGGUCUa-GGACGGG-UGGC- -5'
14421 5' -59.1 NC_003521.1 + 6780 0.67 0.823388
Target:  5'- -cAGGAGUACCAug-CCgGUCCACCa -3'
miRNA:   3'- gcUCCUCGUGGUcuaGGaCGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 129701 0.67 0.815218
Target:  5'- gCGAGGA-CGCCcGcUUCUGCCgGCCGc -3'
miRNA:   3'- -GCUCCUcGUGGuCuAGGACGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 120126 0.67 0.815218
Target:  5'- aGAGGcacAGCACCgAGGUgCgGCUCACCu -3'
miRNA:   3'- gCUCC---UCGUGG-UCUAgGaCGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 139667 0.67 0.812738
Target:  5'- uGAGGAgagggacgcagaccGCGCCGcgcuuUCCgcgUGCCCGCCGa -3'
miRNA:   3'- gCUCCU--------------CGUGGUcu---AGG---ACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 136720 0.68 0.806059
Target:  5'- cCGAGGAuggcagcGCGCCGccuuccgcGUCCUGCCgCGCCc -3'
miRNA:   3'- -GCUCCU-------CGUGGUc-------UAGGACGG-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.