miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 75051 1.08 0.003128
Target:  5'- gCGAGGAGCACCAGAUCCUGCCCACCGc -3'
miRNA:   3'- -GCUCCUCGUGGUCUAGGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 79225 0.72 0.572331
Target:  5'- cCGAGG-GCACCAGA---UGCCCGCgGu -3'
miRNA:   3'- -GCUCCuCGUGGUCUaggACGGGUGgC- -5'
14421 5' -59.1 NC_003521.1 + 80061 0.69 0.717089
Target:  5'- gGAGGaAGCACCGuuguuGUCuCUGCUCAUCGg -3'
miRNA:   3'- gCUCC-UCGUGGUc----UAG-GACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 82679 0.68 0.772265
Target:  5'- ----aGGCACCAGAUCUUgGCCCACa- -3'
miRNA:   3'- gcuccUCGUGGUCUAGGA-CGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 84443 0.76 0.360399
Target:  5'- gGGGGAuGCGCUccgucaacuccaaaAGGUCCUGCuCCACCGu -3'
miRNA:   3'- gCUCCU-CGUGG--------------UCUAGGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 86313 0.67 0.831401
Target:  5'- uGAGGuuggccgccAGCACCuggaugcuggAGGUCUUGCCggCGCCGg -3'
miRNA:   3'- gCUCC---------UCGUGG----------UCUAGGACGG--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 88330 0.66 0.889124
Target:  5'- cCGAGGccuaucuGCACCucuccuucggggAGAUCgUGgCCGCCGc -3'
miRNA:   3'- -GCUCCu------CGUGG------------UCUAGgACgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 91544 0.76 0.354391
Target:  5'- cCGGGGAGCccgauggaaaauuACCAGGUCC-GCCCACa- -3'
miRNA:   3'- -GCUCCUCG-------------UGGUCUAGGaCGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 93182 0.68 0.806059
Target:  5'- cCGGGGcucgacggucggaGGUGCCAGAUCCgauccCUCGCCGa -3'
miRNA:   3'- -GCUCC-------------UCGUGGUCUAGGac---GGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 97648 0.68 0.798437
Target:  5'- uCGcGGcGGCGCCGGGUCCgaccCCCACgGg -3'
miRNA:   3'- -GCuCC-UCGUGGUCUAGGac--GGGUGgC- -5'
14421 5' -59.1 NC_003521.1 + 100912 0.67 0.854432
Target:  5'- cCGAGGAGCAgC-GcgCCU-CCUACCa -3'
miRNA:   3'- -GCUCCUCGUgGuCuaGGAcGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 102305 0.67 0.823388
Target:  5'- uCGAGGuGCGCCGGAcCCagcggGCCCgugaugaucaGCUGg -3'
miRNA:   3'- -GCUCCuCGUGGUCUaGGa----CGGG----------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 105793 0.71 0.625548
Target:  5'- gCGAGGAGCACCugcacagcuucaccgAGAagggcgacgccacggCCUGCCCcugcuACCGg -3'
miRNA:   3'- -GCUCCUCGUGG---------------UCUa--------------GGACGGG-----UGGC- -5'
14421 5' -59.1 NC_003521.1 + 111256 0.67 0.83925
Target:  5'- gCGGcGGAGCAgCCAucGUCggGCCCGCCGu -3'
miRNA:   3'- -GCU-CCUCGU-GGUc-UAGgaCGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 111597 0.71 0.620688
Target:  5'- gCGuGGccagcGGCGCCGGA--CUGCCCACCa -3'
miRNA:   3'- -GCuCC-----UCGUGGUCUagGACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 115553 0.67 0.857383
Target:  5'- uGAcGGAGCGCCGugcugcgcggacguuGAUCUcGCCC-CCGu -3'
miRNA:   3'- gCU-CCUCGUGGU---------------CUAGGaCGGGuGGC- -5'
14421 5' -59.1 NC_003521.1 + 115860 0.77 0.326125
Target:  5'- gGAGG-GCaACCAGAUCCugcugcacgUGCCCACCc -3'
miRNA:   3'- gCUCCuCG-UGGUCUAGG---------ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 116861 0.72 0.562752
Target:  5'- cCGAGGAacuGCAgcaccccuuCCAGAUCCUGCUaucggCGCCGc -3'
miRNA:   3'- -GCUCCU---CGU---------GGUCUAGGACGG-----GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 118894 0.67 0.83925
Target:  5'- uGAcGAGCAUgAGGUCCUcGCCCucgucggcGCCGc -3'
miRNA:   3'- gCUcCUCGUGgUCUAGGA-CGGG--------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 120126 0.67 0.815218
Target:  5'- aGAGGcacAGCACCgAGGUgCgGCUCACCu -3'
miRNA:   3'- gCUCC---UCGUGG-UCUAgGaCGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.