miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 362 0.71 0.64013
Target:  5'- gGAGGcGGCGCCugcGAcCgCUGCCCGCCu -3'
miRNA:   3'- gCUCC-UCGUGGu--CUaG-GACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 2378 0.67 0.846929
Target:  5'- cCGAGGccgcccuGCGCC---UCCUGCCCgACCu -3'
miRNA:   3'- -GCUCCu------CGUGGucuAGGACGGG-UGGc -5'
14421 5' -59.1 NC_003521.1 + 5821 0.68 0.798436
Target:  5'- aGGGGuGGUGCCGGGUCCcGgCgACCGg -3'
miRNA:   3'- gCUCC-UCGUGGUCUAGGaCgGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 6336 0.7 0.669232
Target:  5'- uGAGGAuaacgcGCGCCAGAUCCggauCCCagagggGCCGg -3'
miRNA:   3'- gCUCCU------CGUGGUCUAGGac--GGG------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 6780 0.67 0.823388
Target:  5'- -cAGGAGUACCAug-CCgGUCCACCa -3'
miRNA:   3'- gcUCCUCGUGGUcuaGGaCGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 27364 0.66 0.882578
Target:  5'- --uGGAGCACCAGGcUCCaGCCgggggGCCa -3'
miRNA:   3'- gcuCCUCGUGGUCU-AGGaCGGg----UGGc -5'
14421 5' -59.1 NC_003521.1 + 27903 0.66 0.888479
Target:  5'- aGAGGAaggggagaagaccGCGCC--GUCCUcgaGUCCACCGa -3'
miRNA:   3'- gCUCCU-------------CGUGGucUAGGA---CGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 39805 0.68 0.772265
Target:  5'- uCGGcGGGGCGCCGGGcggUCCU--CCGCCGa -3'
miRNA:   3'- -GCU-CCUCGUGGUCU---AGGAcgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 43802 0.66 0.891686
Target:  5'- aGGGGGGCcgccaugucgcagcaGCCGGGUCa-GCCgcCGCCGg -3'
miRNA:   3'- gCUCCUCG---------------UGGUCUAGgaCGG--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 44711 0.68 0.789838
Target:  5'- cCGAGacGCGCCAGAUCCUGgugaCGCUGa -3'
miRNA:   3'- -GCUCcuCGUGGUCUAGGACgg--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 54191 0.69 0.726495
Target:  5'- gGAGGAGCAgCCcGAcCgCUGCUgGCCGg -3'
miRNA:   3'- gCUCCUCGU-GGuCUaG-GACGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 56462 0.66 0.868889
Target:  5'- cCGAGaGGCGCC-GcgCCacgGCCCGCCc -3'
miRNA:   3'- -GCUCcUCGUGGuCuaGGa--CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 59676 0.69 0.745999
Target:  5'- gGAGGAGCucagacGCCAGGUggagcccuaccucaaCUGCCgCGCCGu -3'
miRNA:   3'- gCUCCUCG------UGGUCUAg--------------GACGG-GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 63085 0.66 0.889124
Target:  5'- -cAGcuGCGCCGGcgCgCUGCCCGCCc -3'
miRNA:   3'- gcUCcuCGUGGUCuaG-GACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 64011 0.68 0.763305
Target:  5'- aGAGGAGCugCAGGcgCUggaGCgCACCa -3'
miRNA:   3'- gCUCCUCGugGUCUa-GGa--CGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 67079 0.68 0.763305
Target:  5'- gGAGGAGCAgCAG--CCUGCCU-CUGg -3'
miRNA:   3'- gCUCCUCGUgGUCuaGGACGGGuGGC- -5'
14421 5' -59.1 NC_003521.1 + 69522 0.69 0.75424
Target:  5'- uGAGGcccAGCACCGccuUCCaGCCCACgCGg -3'
miRNA:   3'- gCUCC---UCGUGGUcu-AGGaCGGGUG-GC- -5'
14421 5' -59.1 NC_003521.1 + 72031 0.66 0.881913
Target:  5'- gCGuGGccuGCACCAGGUCCuggugcagacccuUGCUCAUCu -3'
miRNA:   3'- -GCuCCu--CGUGGUCUAGG-------------ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 72435 0.68 0.798437
Target:  5'- aCGGcGGcaaCGCCAccuacAUCCUGCCCGCCGa -3'
miRNA:   3'- -GCU-CCuc-GUGGUc----UAGGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 73009 0.76 0.347717
Target:  5'- cCGGGGGGguCCAGcUCCUGUCCaacGCCGa -3'
miRNA:   3'- -GCUCCUCguGGUCuAGGACGGG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.