miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 240032 0.68 0.772265
Target:  5'- uCGGcGGGGCGCCGGGcggUCCU--CCGCCGa -3'
miRNA:   3'- -GCU-CCUCGUGGUCU---AGGAcgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 236500 0.7 0.688509
Target:  5'- cCGAGGAGgACCAGccaCCUGCCaagagagaaggACCGa -3'
miRNA:   3'- -GCUCCUCgUGGUCua-GGACGGg----------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 234589 0.66 0.861754
Target:  5'- cCGcGGGAGCGCCGGucUCCauucgGaCCGCCGu -3'
miRNA:   3'- -GC-UCCUCGUGGUCu-AGGa----CgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 233143 0.7 0.678888
Target:  5'- uGGGGGGCG--GGuUCgUGCCCGCCGg -3'
miRNA:   3'- gCUCCUCGUggUCuAGgACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 229625 0.66 0.873078
Target:  5'- uGAGGcGCGacggcucugaagaCAGGUgCUGCCuCACCGg -3'
miRNA:   3'- gCUCCuCGUg------------GUCUAgGACGG-GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 228890 0.68 0.772265
Target:  5'- aGcAGGAGCACCAG--CCggGCCCgGCUGg -3'
miRNA:   3'- gC-UCCUCGUGGUCuaGGa-CGGG-UGGC- -5'
14421 5' -59.1 NC_003521.1 + 226816 0.72 0.534294
Target:  5'- uGAcGGuacAGCGCCaugGGGUCCUcGCCCGCCGc -3'
miRNA:   3'- gCU-CC---UCGUGG---UCUAGGA-CGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 223795 0.69 0.745078
Target:  5'- cCGuGGGcCGCCAGAcgacgggCCUGCgCCGCCGc -3'
miRNA:   3'- -GCuCCUcGUGGUCUa------GGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 222051 0.7 0.675994
Target:  5'- gCGGGGGGCACCAgccgucgcagcagcGAcCCgucgGCgCCACCGc -3'
miRNA:   3'- -GCUCCUCGUGGU--------------CUaGGa---CG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 218110 0.66 0.875832
Target:  5'- uGAGGGcguagagcccGCugUAGAUCUUGCUgACCc -3'
miRNA:   3'- gCUCCU----------CGugGUCUAGGACGGgUGGc -5'
14421 5' -59.1 NC_003521.1 + 217233 0.66 0.882578
Target:  5'- aGAGGAuGCagGCCAGcacccCCgcGCCCACCa -3'
miRNA:   3'- gCUCCU-CG--UGGUCua---GGa-CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 214288 0.67 0.846929
Target:  5'- gGAGGAG-GCCAGGa--UGCCCAUCa -3'
miRNA:   3'- gCUCCUCgUGGUCUaggACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 209180 0.69 0.75424
Target:  5'- cCGGGGAGCcuCCAGAUgac-CCCACCGu -3'
miRNA:   3'- -GCUCCUCGu-GGUCUAggacGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 208897 0.8 0.22265
Target:  5'- cCGAGGAGCGCgAGGUCaucgcgcgCUGCCUGCCGc -3'
miRNA:   3'- -GCUCCUCGUGgUCUAG--------GACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 207338 0.66 0.875832
Target:  5'- uCGGGGGGCGCgucccuCGGGUCggcgcgGCCgGCCGa -3'
miRNA:   3'- -GCUCCUCGUG------GUCUAGga----CGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 203274 0.68 0.798436
Target:  5'- aCGAGGAGauucCGCCGcGAcCCccgcUGCCCACCc -3'
miRNA:   3'- -GCUCCUC----GUGGU-CUaGG----ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 202605 0.67 0.846929
Target:  5'- cCGAGGccgcccuGCGCC---UCCUGCCCgACCu -3'
miRNA:   3'- -GCUCCu------CGUGGucuAGGACGGG-UGGc -5'
14421 5' -59.1 NC_003521.1 + 200436 0.67 0.855173
Target:  5'- gCGAGGuGCGCCAcGAcgCCgacaucguggagaagGCCCugCGc -3'
miRNA:   3'- -GCUCCuCGUGGU-CUa-GGa--------------CGGGugGC- -5'
14421 5' -59.1 NC_003521.1 + 196764 0.7 0.698088
Target:  5'- gGuAGGGGUugCGGAUCUggaaGUCCACCa -3'
miRNA:   3'- gC-UCCUCGugGUCUAGGa---CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 192003 0.69 0.733035
Target:  5'- gCGucGAGCAgccguucaucgucgUCAGGUUCUGCaCCGCCGg -3'
miRNA:   3'- -GCucCUCGU--------------GGUCUAGGACG-GGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.