miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 75051 1.08 0.003128
Target:  5'- gCGAGGAGCACCAGAUCCUGCCCACCGc -3'
miRNA:   3'- -GCUCCUCGUGGUCUAGGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 208897 0.8 0.22265
Target:  5'- cCGAGGAGCGCgAGGUCaucgcgcgCUGCCUGCCGc -3'
miRNA:   3'- -GCUCCUCGUGgUCUAG--------GACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 115860 0.77 0.326125
Target:  5'- gGAGG-GCaACCAGAUCCugcugcacgUGCCCACCc -3'
miRNA:   3'- gCUCCuCG-UGGUCUAGG---------ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 73009 0.76 0.347717
Target:  5'- cCGGGGGGguCCAGcUCCUGUCCaacGCCGa -3'
miRNA:   3'- -GCUCCUCguGGUCuAGGACGGG---UGGC- -5'
14421 5' -59.1 NC_003521.1 + 91544 0.76 0.354391
Target:  5'- cCGGGGAGCccgauggaaaauuACCAGGUCC-GCCCACa- -3'
miRNA:   3'- -GCUCCUCG-------------UGGUCUAGGaCGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 84443 0.76 0.360399
Target:  5'- gGGGGAuGCGCUccgucaacuccaaaAGGUCCUGCuCCACCGu -3'
miRNA:   3'- gCUCCU-CGUGG--------------UCUAGGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 142545 0.74 0.43018
Target:  5'- uGAGGAGUgacggcuugucgcccGCCAGGcucgCCgUGCCCGCCGu -3'
miRNA:   3'- gCUCCUCG---------------UGGUCUa---GG-ACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 191757 0.73 0.515607
Target:  5'- cCGAcGGucCACCGGGUCCUGUCCGCa- -3'
miRNA:   3'- -GCU-CCucGUGGUCUAGGACGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 226816 0.72 0.534294
Target:  5'- uGAcGGuacAGCGCCaugGGGUCCUcGCCCGCCGc -3'
miRNA:   3'- gCU-CC---UCGUGG---UCUAGGA-CGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 116861 0.72 0.562752
Target:  5'- cCGAGGAacuGCAgcaccccuuCCAGAUCCUGCUaucggCGCCGc -3'
miRNA:   3'- -GCUCCU---CGU---------GGUCUAGGACGG-----GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 79225 0.72 0.572331
Target:  5'- cCGAGG-GCACCAGA---UGCCCGCgGu -3'
miRNA:   3'- -GCUCCuCGUGGUCUaggACGGGUGgC- -5'
14421 5' -59.1 NC_003521.1 + 181172 0.72 0.58195
Target:  5'- -cAGGcGCGCCAGcgUCUGCCgCACCa -3'
miRNA:   3'- gcUCCuCGUGGUCuaGGACGG-GUGGc -5'
14421 5' -59.1 NC_003521.1 + 149343 0.71 0.610976
Target:  5'- uCGAGGuGCGCgAGGucugcuUCCUGCgCACCu -3'
miRNA:   3'- -GCUCCuCGUGgUCU------AGGACGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 111597 0.71 0.620688
Target:  5'- gCGuGGccagcGGCGCCGGA--CUGCCCACCa -3'
miRNA:   3'- -GCuCC-----UCGUGGUCUagGACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 105793 0.71 0.625548
Target:  5'- gCGAGGAGCACCugcacagcuucaccgAGAagggcgacgccacggCCUGCCCcugcuACCGg -3'
miRNA:   3'- -GCUCCUCGUGG---------------UCUa--------------GGACGGG-----UGGC- -5'
14421 5' -59.1 NC_003521.1 + 120742 0.71 0.639158
Target:  5'- -cAGGGGCACCAGGUggccgccuggaugCCgGCCUGCCa -3'
miRNA:   3'- gcUCCUCGUGGUCUA-------------GGaCGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 362 0.71 0.64013
Target:  5'- gGAGGcGGCGCCugcGAcCgCUGCCCGCCu -3'
miRNA:   3'- gCUCC-UCGUGGu--CUaG-GACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 156244 0.71 0.644017
Target:  5'- aCGAGGAGCugaccaucaucccgaACCAGggCC-GCUCGCUGa -3'
miRNA:   3'- -GCUCCUCG---------------UGGUCuaGGaCGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 157102 0.7 0.658579
Target:  5'- gGAGGAGCACgAGGcCCUggaccccuuggacGCCCGCUc -3'
miRNA:   3'- gCUCCUCGUGgUCUaGGA-------------CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 6336 0.7 0.669232
Target:  5'- uGAGGAuaacgcGCGCCAGAUCCggauCCCagagggGCCGg -3'
miRNA:   3'- gCUCCU------CGUGGUCUAGGac--GGG------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.