Results 21 - 40 of 96 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 155406 | 0.7 | 0.669232 |
Target: 5'- gCGGGGggcugGGCACCGGAggCCUGCU-GCCGg -3' miRNA: 3'- -GCUCC-----UCGUGGUCUa-GGACGGgUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 222051 | 0.7 | 0.675994 |
Target: 5'- gCGGGGGGCACCAgccgucgcagcagcGAcCCgucgGCgCCACCGc -3' miRNA: 3'- -GCUCCUCGUGGU--------------CUaGGa---CG-GGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 233143 | 0.7 | 0.678888 |
Target: 5'- uGGGGGGCG--GGuUCgUGCCCGCCGg -3' miRNA: 3'- gCUCCUCGUggUCuAGgACGGGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 236500 | 0.7 | 0.688509 |
Target: 5'- cCGAGGAGgACCAGccaCCUGCCaagagagaaggACCGa -3' miRNA: 3'- -GCUCCUCgUGGUCua-GGACGGg----------UGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 146839 | 0.7 | 0.698088 |
Target: 5'- uGGGGGGCGCCucGUCCUcGCCUccGCCc -3' miRNA: 3'- gCUCCUCGUGGucUAGGA-CGGG--UGGc -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 140489 | 0.7 | 0.698088 |
Target: 5'- aGAGGAGCugCAGcaCCUgaGCCgGCUGa -3' miRNA: 3'- gCUCCUCGugGUCuaGGA--CGGgUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 196764 | 0.7 | 0.698088 |
Target: 5'- gGuAGGGGUugCGGAUCUggaaGUCCACCa -3' miRNA: 3'- gC-UCCUCGugGUCUAGGa---CGGGUGGc -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 146097 | 0.69 | 0.717089 |
Target: 5'- --cGGAGCGgaucgauuuCCGcGA-CCUGCCCACCGu -3' miRNA: 3'- gcuCCUCGU---------GGU-CUaGGACGGGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 80061 | 0.69 | 0.717089 |
Target: 5'- gGAGGaAGCACCGuuguuGUCuCUGCUCAUCGg -3' miRNA: 3'- gCUCC-UCGUGGUc----UAG-GACGGGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 157061 | 0.69 | 0.717089 |
Target: 5'- gCGGGGGGCGCCGccacccuGUCCcagGCCCcCCGc -3' miRNA: 3'- -GCUCCUCGUGGUc------UAGGa--CGGGuGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 153082 | 0.69 | 0.726495 |
Target: 5'- --cGGGGC-CCGGG-CCgggGCCCACCa -3' miRNA: 3'- gcuCCUCGuGGUCUaGGa--CGGGUGGc -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 54191 | 0.69 | 0.726495 |
Target: 5'- gGAGGAGCAgCCcGAcCgCUGCUgGCCGg -3' miRNA: 3'- gCUCCUCGU-GGuCUaG-GACGGgUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 139299 | 0.69 | 0.726495 |
Target: 5'- aGAcGGAGCugCAGcgCCUGCUgGUCGg -3' miRNA: 3'- gCU-CCUCGugGUCuaGGACGGgUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 192003 | 0.69 | 0.733035 |
Target: 5'- gCGucGAGCAgccguucaucgucgUCAGGUUCUGCaCCGCCGg -3' miRNA: 3'- -GCucCUCGU--------------GGUCUAGGACG-GGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 167234 | 0.69 | 0.733036 |
Target: 5'- uGuAGG-GCGCCAGGUCCUcguucaugaccagcGCCCGCa- -3' miRNA: 3'- gC-UCCuCGUGGUCUAGGA--------------CGGGUGgc -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 139571 | 0.69 | 0.735827 |
Target: 5'- uGGGGAuGaugaACCAGGUCUUGCCguggCGCCGc -3' miRNA: 3'- gCUCCU-Cg---UGGUCUAGGACGG----GUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 223795 | 0.69 | 0.745078 |
Target: 5'- cCGuGGGcCGCCAGAcgacgggCCUGCgCCGCCGc -3' miRNA: 3'- -GCuCCUcGUGGUCUa------GGACG-GGUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 139795 | 0.69 | 0.745079 |
Target: 5'- --uGGAGCugCAcGggCgUGCCCGCCa -3' miRNA: 3'- gcuCCUCGugGU-CuaGgACGGGUGGc -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 59676 | 0.69 | 0.745999 |
Target: 5'- gGAGGAGCucagacGCCAGGUggagcccuaccucaaCUGCCgCGCCGu -3' miRNA: 3'- gCUCCUCG------UGGUCUAg--------------GACGG-GUGGC- -5' |
|||||||
14421 | 5' | -59.1 | NC_003521.1 | + | 209180 | 0.69 | 0.75424 |
Target: 5'- cCGGGGAGCcuCCAGAUgac-CCCACCGu -3' miRNA: 3'- -GCUCCUCGu-GGUCUAggacGGGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home