miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 209180 0.69 0.75424
Target:  5'- cCGGGGAGCcuCCAGAUgac-CCCACCGu -3'
miRNA:   3'- -GCUCCUCGu-GGUCUAggacGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 80061 0.69 0.717089
Target:  5'- gGAGGaAGCACCGuuguuGUCuCUGCUCAUCGg -3'
miRNA:   3'- gCUCC-UCGUGGUc----UAG-GACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 146097 0.69 0.717089
Target:  5'- --cGGAGCGgaucgauuuCCGcGA-CCUGCCCACCGu -3'
miRNA:   3'- gcuCCUCGU---------GGU-CUaGGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 153082 0.69 0.726495
Target:  5'- --cGGGGC-CCGGG-CCgggGCCCACCa -3'
miRNA:   3'- gcuCCUCGuGGUCUaGGa--CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 192003 0.69 0.733035
Target:  5'- gCGucGAGCAgccguucaucgucgUCAGGUUCUGCaCCGCCGg -3'
miRNA:   3'- -GCucCUCGU--------------GGUCUAGGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 139571 0.69 0.735827
Target:  5'- uGGGGAuGaugaACCAGGUCUUGCCguggCGCCGc -3'
miRNA:   3'- gCUCCU-Cg---UGGUCUAGGACGG----GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 223795 0.69 0.745078
Target:  5'- cCGuGGGcCGCCAGAcgacgggCCUGCgCCGCCGc -3'
miRNA:   3'- -GCuCCUcGUGGUCUa------GGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 59676 0.69 0.745999
Target:  5'- gGAGGAGCucagacGCCAGGUggagcccuaccucaaCUGCCgCGCCGu -3'
miRNA:   3'- gCUCCUCG------UGGUCUAg--------------GACGG-GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 69522 0.69 0.75424
Target:  5'- uGAGGcccAGCACCGccuUCCaGCCCACgCGg -3'
miRNA:   3'- gCUCC---UCGUGGUcu-AGGaCGGGUG-GC- -5'
14421 5' -59.1 NC_003521.1 + 146839 0.7 0.698088
Target:  5'- uGGGGGGCGCCucGUCCUcGCCUccGCCc -3'
miRNA:   3'- gCUCCUCGUGGucUAGGA-CGGG--UGGc -5'
14421 5' -59.1 NC_003521.1 + 236500 0.7 0.688509
Target:  5'- cCGAGGAGgACCAGccaCCUGCCaagagagaaggACCGa -3'
miRNA:   3'- -GCUCCUCgUGGUCua-GGACGGg----------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 6336 0.7 0.669232
Target:  5'- uGAGGAuaacgcGCGCCAGAUCCggauCCCagagggGCCGg -3'
miRNA:   3'- gCUCCU------CGUGGUCUAGGac--GGG------UGGC- -5'
14421 5' -59.1 NC_003521.1 + 73009 0.76 0.347717
Target:  5'- cCGGGGGGguCCAGcUCCUGUCCaacGCCGa -3'
miRNA:   3'- -GCUCCUCguGGUCuAGGACGGG---UGGC- -5'
14421 5' -59.1 NC_003521.1 + 91544 0.76 0.354391
Target:  5'- cCGGGGAGCccgauggaaaauuACCAGGUCC-GCCCACa- -3'
miRNA:   3'- -GCUCCUCG-------------UGGUCUAGGaCGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 84443 0.76 0.360399
Target:  5'- gGGGGAuGCGCUccgucaacuccaaaAGGUCCUGCuCCACCGu -3'
miRNA:   3'- gCUCCU-CGUGG--------------UCUAGGACG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 142545 0.74 0.43018
Target:  5'- uGAGGAGUgacggcuugucgcccGCCAGGcucgCCgUGCCCGCCGu -3'
miRNA:   3'- gCUCCUCG---------------UGGUCUa---GG-ACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 226816 0.72 0.534294
Target:  5'- uGAcGGuacAGCGCCaugGGGUCCUcGCCCGCCGc -3'
miRNA:   3'- gCU-CC---UCGUGG---UCUAGGA-CGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 79225 0.72 0.572331
Target:  5'- cCGAGG-GCACCAGA---UGCCCGCgGu -3'
miRNA:   3'- -GCUCCuCGUGGUCUaggACGGGUGgC- -5'
14421 5' -59.1 NC_003521.1 + 149343 0.71 0.610976
Target:  5'- uCGAGGuGCGCgAGGucugcuUCCUGCgCACCu -3'
miRNA:   3'- -GCUCCuCGUGgUCU------AGGACGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 120742 0.71 0.639158
Target:  5'- -cAGGGGCACCAGGUggccgccuggaugCCgGCCUGCCa -3'
miRNA:   3'- gcUCCUCGUGGUCUA-------------GGaCGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.