miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 208897 0.8 0.22265
Target:  5'- cCGAGGAGCGCgAGGUCaucgcgcgCUGCCUGCCGc -3'
miRNA:   3'- -GCUCCUCGUGgUCUAG--------GACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 54191 0.69 0.726495
Target:  5'- gGAGGAGCAgCCcGAcCgCUGCUgGCCGg -3'
miRNA:   3'- gCUCCUCGU-GGuCUaG-GACGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 139795 0.69 0.745079
Target:  5'- --uGGAGCugCAcGggCgUGCCCGCCa -3'
miRNA:   3'- gcuCCUCGugGU-CuaGgACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 88330 0.66 0.889124
Target:  5'- cCGAGGccuaucuGCACCucuccuucggggAGAUCgUGgCCGCCGc -3'
miRNA:   3'- -GCUCCu------CGUGG------------UCUAGgACgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 181172 0.72 0.58195
Target:  5'- -cAGGcGCGCCAGcgUCUGCCgCACCa -3'
miRNA:   3'- gcUCCuCGUGGUCuaGGACGG-GUGGc -5'
14421 5' -59.1 NC_003521.1 + 111597 0.71 0.620688
Target:  5'- gCGuGGccagcGGCGCCGGA--CUGCCCACCa -3'
miRNA:   3'- -GCuCC-----UCGUGGUCUagGACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 362 0.71 0.64013
Target:  5'- gGAGGcGGCGCCugcGAcCgCUGCCCGCCu -3'
miRNA:   3'- gCUCC-UCGUGGu--CUaG-GACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 156244 0.71 0.644017
Target:  5'- aCGAGGAGCugaccaucaucccgaACCAGggCC-GCUCGCUGa -3'
miRNA:   3'- -GCUCCUCG---------------UGGUCuaGGaCGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 222051 0.7 0.675994
Target:  5'- gCGGGGGGCACCAgccgucgcagcagcGAcCCgucgGCgCCACCGc -3'
miRNA:   3'- -GCUCCUCGUGGU--------------CUaGGa---CG-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 139299 0.69 0.726495
Target:  5'- aGAcGGAGCugCAGcgCCUGCUgGUCGg -3'
miRNA:   3'- gCU-CCUCGugGUCuaGGACGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 140489 0.7 0.698088
Target:  5'- aGAGGAGCugCAGcaCCUgaGCCgGCUGa -3'
miRNA:   3'- gCUCCUCGugGUCuaGGA--CGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 155406 0.7 0.669232
Target:  5'- gCGGGGggcugGGCACCGGAggCCUGCU-GCCGg -3'
miRNA:   3'- -GCUCC-----UCGUGGUCUa-GGACGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 115860 0.77 0.326125
Target:  5'- gGAGG-GCaACCAGAUCCugcugcacgUGCCCACCc -3'
miRNA:   3'- gCUCCuCG-UGGUCUAGG---------ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 196764 0.7 0.698088
Target:  5'- gGuAGGGGUugCGGAUCUggaaGUCCACCa -3'
miRNA:   3'- gC-UCCUCGugGUCUAGGa---CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 191757 0.73 0.515607
Target:  5'- cCGAcGGucCACCGGGUCCUGUCCGCa- -3'
miRNA:   3'- -GCU-CCucGUGGUCUAGGACGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 157102 0.7 0.658579
Target:  5'- gGAGGAGCACgAGGcCCUggaccccuuggacGCCCGCUc -3'
miRNA:   3'- gCUCCUCGUGgUCUaGGA-------------CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 157061 0.69 0.717089
Target:  5'- gCGGGGGGCGCCGccacccuGUCCcagGCCCcCCGc -3'
miRNA:   3'- -GCUCCUCGUGGUc------UAGGa--CGGGuGGC- -5'
14421 5' -59.1 NC_003521.1 + 167234 0.69 0.733036
Target:  5'- uGuAGG-GCGCCAGGUCCUcguucaugaccagcGCCCGCa- -3'
miRNA:   3'- gC-UCCuCGUGGUCUAGGA--------------CGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 116861 0.72 0.562752
Target:  5'- cCGAGGAacuGCAgcaccccuuCCAGAUCCUGCUaucggCGCCGc -3'
miRNA:   3'- -GCUCCU---CGU---------GGUCUAGGACGG-----GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 105793 0.71 0.625548
Target:  5'- gCGAGGAGCACCugcacagcuucaccgAGAagggcgacgccacggCCUGCCCcugcuACCGg -3'
miRNA:   3'- -GCUCCUCGUGG---------------UCUa--------------GGACGGG-----UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.