Results 21 - 40 of 592 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14422 | 3' | -54.7 | NC_003521.1 | + | 18729 | 0.79 | 0.458625 |
Target: 5'- cGCUGGCGgcGGCGAucgUGGCGGCGGUGGc -3' miRNA: 3'- -CGGCUGCuaCUGCU---GCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 196724 | 0.8 | 0.432417 |
Target: 5'- aCCGGCGgcGACGGUGGUGGCGGCGGc -3' miRNA: 3'- cGGCUGCuaCUGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 137245 | 0.84 | 0.263841 |
Target: 5'- aCCGGcCGggGcCGACGGCGGCAGCGGg -3' miRNA: 3'- cGGCU-GCuaCuGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 43433 | 0.84 | 0.256101 |
Target: 5'- cCCGACGAggaGGCGGCGGCGgcccuggaacucucACAGCGGg -3' miRNA: 3'- cGGCUGCUa--CUGCUGCCGU--------------UGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 145882 | 0.85 | 0.23509 |
Target: 5'- cGCCGACGAcgaggccgccGGCGGCGGgAGCAGCGGc -3' miRNA: 3'- -CGGCUGCUa---------CUGCUGCCgUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 167701 | 0.87 | 0.189987 |
Target: 5'- cGCuCGugGAggaGGCGGCGGUAGCAGCGGu -3' miRNA: 3'- -CG-GCugCUa--CUGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 218705 | 0.87 | 0.189987 |
Target: 5'- gGCgGAgGA-GACGGCGGCGGCGGCGGg -3' miRNA: 3'- -CGgCUgCUaCUGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 125206 | 0.87 | 0.181056 |
Target: 5'- gGCCGccAUGGUGGCGGCGGCAAC-GCGGg -3' miRNA: 3'- -CGGC--UGCUACUGCUGCCGUUGuCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 163899 | 0.87 | 0.168356 |
Target: 5'- uGCCGACGGUGcguuacucggguGCGGCGGCAGCGGCa- -3' miRNA: 3'- -CGGCUGCUAC------------UGCUGCCGUUGUCGcc -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 74767 | 0.93 | 0.081425 |
Target: 5'- cGUCGACGuggcuggaguAUGACGACGGCGGCAGCGGu -3' miRNA: 3'- -CGGCUGC----------UACUGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 92012 | 0.83 | 0.282425 |
Target: 5'- -gCGGCGAggcGCGGCGGCGGCGGCGGu -3' miRNA: 3'- cgGCUGCUac-UGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 150547 | 0.83 | 0.282425 |
Target: 5'- uCCGGCGGUGGuggugcggguggUGGCGGCGGCGGCGGc -3' miRNA: 3'- cGGCUGCUACU------------GCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 77694 | 0.8 | 0.432417 |
Target: 5'- cGCUGGCGAagacagccgUGGCGGCguuguuGGCGACGGCGGc -3' miRNA: 3'- -CGGCUGCU---------ACUGCUG------CCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 209553 | 0.8 | 0.398873 |
Target: 5'- cCCGGCGggGugG-CGGCGACGGUGGc -3' miRNA: 3'- cGGCUGCuaCugCuGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 46631 | 0.8 | 0.398873 |
Target: 5'- aGCCaGGCGGUaGACGGCGuCGGCGGCGGg -3' miRNA: 3'- -CGG-CUGCUA-CUGCUGCcGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 163731 | 0.8 | 0.398056 |
Target: 5'- cGUCGG-GAUGAgcggcgcCGGCGGCAACAGCGGc -3' miRNA: 3'- -CGGCUgCUACU-------GCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 82814 | 0.81 | 0.382738 |
Target: 5'- aGCCGACGA-GAgGAgGGCAcCGGCGGc -3' miRNA: 3'- -CGGCUGCUaCUgCUgCCGUuGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 214808 | 0.81 | 0.374834 |
Target: 5'- cGCCGuCGGgcgccgGGCG-CGGCGACGGCGGu -3' miRNA: 3'- -CGGCuGCUa-----CUGCuGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 163190 | 0.82 | 0.337003 |
Target: 5'- aGCgGAcaCGGUGGUGGCGGCGGCAGCGGc -3' miRNA: 3'- -CGgCU--GCUACUGCUGCCGUUGUCGCC- -5' |
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14422 | 3' | -54.7 | NC_003521.1 | + | 142915 | 0.83 | 0.302031 |
Target: 5'- aGCCGGCGAcGuCGGCGuuGCAGCAGCGGc -3' miRNA: 3'- -CGGCUGCUaCuGCUGC--CGUUGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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