miRNA display CGI


Results 1 - 20 of 592 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 18729 0.79 0.458625
Target:  5'- cGCUGGCGgcGGCGAucgUGGCGGCGGUGGc -3'
miRNA:   3'- -CGGCUGCuaCUGCU---GCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 163190 0.82 0.337003
Target:  5'- aGCgGAcaCGGUGGUGGCGGCGGCAGCGGc -3'
miRNA:   3'- -CGgCU--GCUACUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 214808 0.81 0.374834
Target:  5'- cGCCGuCGGgcgccgGGCG-CGGCGACGGCGGu -3'
miRNA:   3'- -CGGCuGCUa-----CUGCuGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 82814 0.81 0.382738
Target:  5'- aGCCGACGA-GAgGAgGGCAcCGGCGGc -3'
miRNA:   3'- -CGGCUGCUaCUgCUgCCGUuGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 163731 0.8 0.398056
Target:  5'- cGUCGG-GAUGAgcggcgcCGGCGGCAACAGCGGc -3'
miRNA:   3'- -CGGCUgCUACU-------GCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 46631 0.8 0.398873
Target:  5'- aGCCaGGCGGUaGACGGCGuCGGCGGCGGg -3'
miRNA:   3'- -CGG-CUGCUA-CUGCUGCcGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 209553 0.8 0.398873
Target:  5'- cCCGGCGggGugG-CGGCGACGGUGGc -3'
miRNA:   3'- cGGCUGCuaCugCuGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 77694 0.8 0.432417
Target:  5'- cGCUGGCGAagacagccgUGGCGGCguuguuGGCGACGGCGGc -3'
miRNA:   3'- -CGGCUGCU---------ACUGCUG------CCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 196724 0.8 0.432417
Target:  5'- aCCGGCGgcGACGGUGGUGGCGGCGGc -3'
miRNA:   3'- cGGCUGCuaCUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 142915 0.83 0.302031
Target:  5'- aGCCGGCGAcGuCGGCGuuGCAGCAGCGGc -3'
miRNA:   3'- -CGGCUGCUaCuGCUGC--CGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 150547 0.83 0.282425
Target:  5'- uCCGGCGGUGGuggugcggguggUGGCGGCGGCGGCGGc -3'
miRNA:   3'- cGGCUGCUACU------------GCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 92012 0.83 0.282425
Target:  5'- -gCGGCGAggcGCGGCGGCGGCGGCGGu -3'
miRNA:   3'- cgGCUGCUac-UGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 74767 0.93 0.081425
Target:  5'- cGUCGACGuggcuggaguAUGACGACGGCGGCAGCGGu -3'
miRNA:   3'- -CGGCUGC----------UACUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 163899 0.87 0.168356
Target:  5'- uGCCGACGGUGcguuacucggguGCGGCGGCAGCGGCa- -3'
miRNA:   3'- -CGGCUGCUAC------------UGCUGCCGUUGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 125206 0.87 0.181056
Target:  5'- gGCCGccAUGGUGGCGGCGGCAAC-GCGGg -3'
miRNA:   3'- -CGGC--UGCUACUGCUGCCGUUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 218705 0.87 0.189987
Target:  5'- gGCgGAgGA-GACGGCGGCGGCGGCGGg -3'
miRNA:   3'- -CGgCUgCUaCUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 167701 0.87 0.189987
Target:  5'- cGCuCGugGAggaGGCGGCGGUAGCAGCGGu -3'
miRNA:   3'- -CG-GCugCUa--CUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 145882 0.85 0.23509
Target:  5'- cGCCGACGAcgaggccgccGGCGGCGGgAGCAGCGGc -3'
miRNA:   3'- -CGGCUGCUa---------CUGCUGCCgUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 43433 0.84 0.256101
Target:  5'- cCCGACGAggaGGCGGCGGCGgcccuggaacucucACAGCGGg -3'
miRNA:   3'- cGGCUGCUa--CUGCUGCCGU--------------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 137245 0.84 0.263841
Target:  5'- aCCGGcCGggGcCGACGGCGGCAGCGGg -3'
miRNA:   3'- cGGCU-GCuaCuGCUGCCGUUGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.