miRNA display CGI


Results 1 - 20 of 592 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 230405 0.65 0.989344
Target:  5'- cGCCGACacgcgguuuuugaGAUG-CGG-GGCGAC-GCGGu -3'
miRNA:   3'- -CGGCUG-------------CUACuGCUgCCGUUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 177786 0.65 0.98895
Target:  5'- gGCCGACGGggccuguccgcugGugGGCGuCGugGGCGc -3'
miRNA:   3'- -CGGCUGCUa------------CugCUGCcGUugUCGCc -5'
14422 3' -54.7 NC_003521.1 + 101060 0.66 0.983296
Target:  5'- cGCCGACGGccggauccUGcCGuCGGCAcGCGGCc- -3'
miRNA:   3'- -CGGCUGCU--------ACuGCuGCCGU-UGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 129884 0.66 0.981392
Target:  5'- gGCCGGgGAggagGAgGACGaCGACggGGCGGc -3'
miRNA:   3'- -CGGCUgCUa---CUgCUGCcGUUG--UCGCC- -5'
14422 3' -54.7 NC_003521.1 + 99024 0.66 0.983296
Target:  5'- --aGACGAUGGCGcCGGCucCGGgcCGGu -3'
miRNA:   3'- cggCUGCUACUGCuGCCGuuGUC--GCC- -5'
14422 3' -54.7 NC_003521.1 + 79621 0.66 0.981392
Target:  5'- uGCCGggGCGAccgcGGCGccuCGGCGucgucugcugcuGCAGCGGc -3'
miRNA:   3'- -CGGC--UGCUa---CUGCu--GCCGU------------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 26774 0.66 0.983296
Target:  5'- -aUGACGAUGGgGACGcGCu-CGGgGGg -3'
miRNA:   3'- cgGCUGCUACUgCUGC-CGuuGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 63873 0.66 0.983296
Target:  5'- gGUgGACGA-GGCGGCGcgccgggagcuGCAGCAGuUGGg -3'
miRNA:   3'- -CGgCUGCUaCUGCUGC-----------CGUUGUC-GCC- -5'
14422 3' -54.7 NC_003521.1 + 16224 0.66 0.981392
Target:  5'- cGUCGACaGGUacuACGACGGUuucggagccacAAUAGCGGu -3'
miRNA:   3'- -CGGCUG-CUAc--UGCUGCCG-----------UUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 29392 0.66 0.981392
Target:  5'- gGCCGAgGAggacGACGACGagGACAGUccGGg -3'
miRNA:   3'- -CGGCUgCUa---CUGCUGCcgUUGUCG--CC- -5'
14422 3' -54.7 NC_003521.1 + 125959 0.66 0.981392
Target:  5'- gGCCGACGcgGGCGuCaGCAcCAGUu- -3'
miRNA:   3'- -CGGCUGCuaCUGCuGcCGUuGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 134968 0.66 0.981392
Target:  5'- gGCUGAUGAagGugGGCuugugcagccGGUAGCAGgGGc -3'
miRNA:   3'- -CGGCUGCUa-CugCUG----------CCGUUGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 17065 0.66 0.983296
Target:  5'- cGCCGACGAUaccGCuGGCGGCGACccaCGu -3'
miRNA:   3'- -CGGCUGCUAc--UG-CUGCCGUUGuc-GCc -5'
14422 3' -54.7 NC_003521.1 + 163159 0.66 0.981392
Target:  5'- cCUGAgCGGUGGUGGCaGCAauaACAGCGGc -3'
miRNA:   3'- cGGCU-GCUACUGCUGcCGU---UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 135472 0.66 0.983112
Target:  5'- cGUCGACGcgGACGcagugGCGcGCAcauaaaaccgaaaGCGGCGa -3'
miRNA:   3'- -CGGCUGCuaCUGC-----UGC-CGU-------------UGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 72291 0.66 0.983296
Target:  5'- aCCGcGCGuccaGCGAgGGCAGCAGCa- -3'
miRNA:   3'- cGGC-UGCuac-UGCUgCCGUUGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 163769 0.66 0.983296
Target:  5'- -aCGGCGgcGGCaacaACGGUAGCGGCGc -3'
miRNA:   3'- cgGCUGCuaCUGc---UGCCGUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 215982 0.66 0.981392
Target:  5'- gGCCGGCGAaGAUGAUGcCcAUGGUGGu -3'
miRNA:   3'- -CGGCUGCUaCUGCUGCcGuUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 64746 0.66 0.983296
Target:  5'- cGCCGugGccaaGACGcCGGCcGGC-GCGGc -3'
miRNA:   3'- -CGGCugCua--CUGCuGCCG-UUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 55738 0.66 0.983296
Target:  5'- cGCCucccagcGCGcgGGCGGCaGCGACAggcGCGGc -3'
miRNA:   3'- -CGGc------UGCuaCUGCUGcCGUUGU---CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.