miRNA display CGI


Results 1 - 20 of 592 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 39 0.67 0.978015
Target:  5'- gGCCGGgauCGGUGAgucaCGgaaccgguuuccgcgGCGGCGuGCGGCGGg -3'
miRNA:   3'- -CGGCU---GCUACU----GC---------------UGCCGU-UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 316 0.68 0.956389
Target:  5'- uCCgGAUGAgacUGugG-UGGUGACAGCGGg -3'
miRNA:   3'- cGG-CUGCU---ACugCuGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 353 0.72 0.824481
Target:  5'- gGCaaACGAUGugGGCGGCGuGCuGUGGa -3'
miRNA:   3'- -CGgcUGCUACugCUGCCGU-UGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 427 0.66 0.988129
Target:  5'- uGCUGGCGAggccaaGcCGGCGGUAAgcCAGCcGGu -3'
miRNA:   3'- -CGGCUGCUa-----CuGCUGCCGUU--GUCG-CC- -5'
14422 3' -54.7 NC_003521.1 + 980 0.66 0.988129
Target:  5'- gGCCGGCGGUcugcucccGugGGcCGGCcguACGGCu- -3'
miRNA:   3'- -CGGCUGCUA--------CugCU-GCCGu--UGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 1294 0.72 0.804445
Target:  5'- cGCCGACGAaugguuccgcuacGGCGcCGGCGACGuggcGCGGc -3'
miRNA:   3'- -CGGCUGCUa------------CUGCuGCCGUUGU----CGCC- -5'
14422 3' -54.7 NC_003521.1 + 1578 0.69 0.935472
Target:  5'- cGCCGuCGcUGcUGACGGCcguGCAGCGc -3'
miRNA:   3'- -CGGCuGCuACuGCUGCCGu--UGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 2242 0.78 0.513425
Target:  5'- cGCCGucguccGCGAUGACGAUGGU-ACGGaCGGg -3'
miRNA:   3'- -CGGC------UGCUACUGCUGCCGuUGUC-GCC- -5'
14422 3' -54.7 NC_003521.1 + 3183 0.71 0.877291
Target:  5'- cGCUG-CG-UGGCGACaagGGCAACAGCa- -3'
miRNA:   3'- -CGGCuGCuACUGCUG---CCGUUGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 4278 0.71 0.861676
Target:  5'- aGCCGACGAgcgacgccgaacGACGACaaGGCAgagggACGGcCGGg -3'
miRNA:   3'- -CGGCUGCUa-----------CUGCUG--CCGU-----UGUC-GCC- -5'
14422 3' -54.7 NC_003521.1 + 4467 0.67 0.979331
Target:  5'- gGCUGACGGUcugGGCGGCGAucCAGCa- -3'
miRNA:   3'- -CGGCUGCUAcugCUGCCGUU--GUCGcc -5'
14422 3' -54.7 NC_003521.1 + 5281 0.75 0.668694
Target:  5'- uGUCGACGGgucaGAgGuaACGGCGACAGUGGu -3'
miRNA:   3'- -CGGCUGCUa---CUgC--UGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 5331 0.72 0.840473
Target:  5'- cGCCGGCcgcGACucCGGCGAUAGUGGu -3'
miRNA:   3'- -CGGCUGcuaCUGcuGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 5530 0.72 0.848209
Target:  5'- -gCGACGGUGACGGCaGCcGGC-GCGGc -3'
miRNA:   3'- cgGCUGCUACUGCUGcCG-UUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 6064 0.76 0.599978
Target:  5'- gGUCGACGAaggGaauGCGACGGCcgguGCGGCGGc -3'
miRNA:   3'- -CGGCUGCUa--C---UGCUGCCGu---UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 6193 0.66 0.986657
Target:  5'- --aGACGAucugcggcaagUGACuguGCGGCAugACGGCGGu -3'
miRNA:   3'- cggCUGCU-----------ACUGc--UGCCGU--UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 6439 0.72 0.834953
Target:  5'- gGCCGcugcgacaacagcACGGgaggagcgGAUGACGGCAcgggaggcagguccgGCAGCGGa -3'
miRNA:   3'- -CGGC-------------UGCUa-------CUGCUGCCGU---------------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 6501 0.67 0.974707
Target:  5'- --aGGCGGUGACGGCagaggcucaccGGUGACgagGGCGGu -3'
miRNA:   3'- cggCUGCUACUGCUG-----------CCGUUG---UCGCC- -5'
14422 3' -54.7 NC_003521.1 + 7075 0.66 0.988129
Target:  5'- cCCGGUGAgaagaagcaGACG-CGGCGGCGGCGu -3'
miRNA:   3'- cGGCUGCUa--------CUGCuGCCGUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 7431 0.66 0.985048
Target:  5'- aGCCGA-GAcGGCaGCGGCAGCucCGGa -3'
miRNA:   3'- -CGGCUgCUaCUGcUGCCGUUGucGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.