miRNA display CGI


Results 1 - 20 of 592 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 75633 1.12 0.004986
Target:  5'- cGCCGACGAUGACGACGGCAACAGCGGc -3'
miRNA:   3'- -CGGCUGCUACUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 74767 0.93 0.081425
Target:  5'- cGUCGACGuggcuggaguAUGACGACGGCGGCAGCGGu -3'
miRNA:   3'- -CGGCUGC----------UACUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 78981 0.89 0.14533
Target:  5'- uGCgGACGAUGACGACGGUAACGuCGGa -3'
miRNA:   3'- -CGgCUGCUACUGCUGCCGUUGUcGCC- -5'
14422 3' -54.7 NC_003521.1 + 76342 0.88 0.148958
Target:  5'- aGgCGACGGUGACGgcugcgGCGGCGGCAGCGGc -3'
miRNA:   3'- -CgGCUGCUACUGC------UGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 163899 0.87 0.168356
Target:  5'- uGCCGACGGUGcguuacucggguGCGGCGGCAGCGGCa- -3'
miRNA:   3'- -CGGCUGCUAC------------UGCUGCCGUUGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 125206 0.87 0.181056
Target:  5'- gGCCGccAUGGUGGCGGCGGCAAC-GCGGg -3'
miRNA:   3'- -CGGC--UGCUACUGCUGCCGUUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 169441 0.87 0.181056
Target:  5'- cGCgGACGAcGGCGuCGGCGGCGGCGGg -3'
miRNA:   3'- -CGgCUGCUaCUGCuGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 167701 0.87 0.189987
Target:  5'- cGCuCGugGAggaGGCGGCGGUAGCAGCGGu -3'
miRNA:   3'- -CG-GCugCUa--CUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 218705 0.87 0.189987
Target:  5'- gGCgGAgGA-GACGGCGGCGGCGGCGGg -3'
miRNA:   3'- -CGgCUgCUaCUGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 124599 0.86 0.214023
Target:  5'- gGCCGACGAgGACGACGaaGCGGCGGCGa -3'
miRNA:   3'- -CGGCUGCUaCUGCUGC--CGUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 145882 0.85 0.23509
Target:  5'- cGCCGACGAcgaggccgccGGCGGCGGgAGCAGCGGc -3'
miRNA:   3'- -CGGCUGCUa---------CUGCUGCCgUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 125713 0.85 0.240622
Target:  5'- cGCCGGCGGUcACGACGGgGGCGGCGa -3'
miRNA:   3'- -CGGCUGCUAcUGCUGCCgUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 123169 0.85 0.246262
Target:  5'- uGCUGA-GGUGGCGGCGGCGGCGGgGGa -3'
miRNA:   3'- -CGGCUgCUACUGCUGCCGUUGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 71859 0.85 0.246262
Target:  5'- cGUCGGCGAcagcagcggGAgCGACGGCGACAGCGGc -3'
miRNA:   3'- -CGGCUGCUa--------CU-GCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 43433 0.84 0.256101
Target:  5'- cCCGACGAggaGGCGGCGGCGgcccuggaacucucACAGCGGg -3'
miRNA:   3'- cGGCUGCUa--CUGCUGCCGU--------------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 137245 0.84 0.263841
Target:  5'- aCCGGcCGggGcCGACGGCGGCAGCGGg -3'
miRNA:   3'- cGGCU-GCuaCuGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 150547 0.83 0.282425
Target:  5'- uCCGGCGGUGGuggugcggguggUGGCGGCGGCGGCGGc -3'
miRNA:   3'- cGGCUGCUACU------------GCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 92012 0.83 0.282425
Target:  5'- -gCGGCGAggcGCGGCGGCGGCGGCGGu -3'
miRNA:   3'- cgGCUGCUac-UGCUGCCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 135242 0.83 0.288846
Target:  5'- cGCCGGCGgcGGCGACGacaCGGCGGCGGa -3'
miRNA:   3'- -CGGCUGCuaCUGCUGCc--GUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 55904 0.83 0.295382
Target:  5'- cGCCGAcccucCGAcGGCGGCGGCAACGGgGGu -3'
miRNA:   3'- -CGGCU-----GCUaCUGCUGCCGUUGUCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.