miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 3' -56.4 NC_003521.1 + 82672 1.08 0.004314
Target:  5'- gACUACCAGGCACCAGAUCUUGGCCCAc -3'
miRNA:   3'- -UGAUGGUCCGUGGUCUAGAACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 110646 0.75 0.520451
Target:  5'- --cGCCGGGCGCCGGcacgGUCacGGCCCGg -3'
miRNA:   3'- ugaUGGUCCGUGGUC----UAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 36686 0.74 0.530113
Target:  5'- aGCUgagGCCGGGCuCCGGcgCcUGGCCCGa -3'
miRNA:   3'- -UGA---UGGUCCGuGGUCuaGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 135019 0.74 0.539839
Target:  5'- gGCUGCCGGGCACCG-----UGGCCUg -3'
miRNA:   3'- -UGAUGGUCCGUGGUcuagaACCGGGu -5'
14437 3' -56.4 NC_003521.1 + 204129 0.74 0.559465
Target:  5'- uGCUcggGCCAGGCGCCGGAgcccGGCCuCAg -3'
miRNA:   3'- -UGA---UGGUCCGUGGUCUagaaCCGG-GU- -5'
14437 3' -56.4 NC_003521.1 + 127816 0.74 0.569354
Target:  5'- uCUGCCAGGCGCgCAGcUCguggaagGGCCCc -3'
miRNA:   3'- uGAUGGUCCGUG-GUCuAGaa-----CCGGGu -5'
14437 3' -56.4 NC_003521.1 + 58442 0.72 0.638403
Target:  5'- cGCUGCCGGGCgaacuuuccgcgcACCacgucgaccaGGGUCUgccaaUGGCCCAg -3'
miRNA:   3'- -UGAUGGUCCG-------------UGG----------UCUAGA-----ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 26273 0.72 0.639408
Target:  5'- cACcACCAGGCACCGGucUCgaGGCCa- -3'
miRNA:   3'- -UGaUGGUCCGUGGUCu-AGaaCCGGgu -5'
14437 3' -56.4 NC_003521.1 + 25654 0.71 0.718932
Target:  5'- --cAUCAGGCGgCAGAUCgugcUGGUCCAc -3'
miRNA:   3'- ugaUGGUCCGUgGUCUAGa---ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 121616 0.7 0.747805
Target:  5'- uGCUGCCGGGCaagACCgagaAGAUCaagcGGCCCc -3'
miRNA:   3'- -UGAUGGUCCG---UGG----UCUAGaa--CCGGGu -5'
14437 3' -56.4 NC_003521.1 + 61570 0.7 0.774881
Target:  5'- cGCUGCuggccggcgaguuCAGGCGCCAGAa---GGCCCGc -3'
miRNA:   3'- -UGAUG-------------GUCCGUGGUCUagaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 139202 0.69 0.811348
Target:  5'- cGCUACCA-GCGCCGGGcCcUGGCCg- -3'
miRNA:   3'- -UGAUGGUcCGUGGUCUaGaACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 87773 0.69 0.819864
Target:  5'- gGCgcagGCCAGG-GCCAGGUgCUgaGGCCCGu -3'
miRNA:   3'- -UGa---UGGUCCgUGGUCUA-GAa-CCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 74397 0.68 0.844395
Target:  5'- cGCUGCCA--CGCCGGGUCU-GGCUCu -3'
miRNA:   3'- -UGAUGGUccGUGGUCUAGAaCCGGGu -5'
14437 3' -56.4 NC_003521.1 + 141482 0.68 0.844395
Target:  5'- cGCUucuCCGGGCGCgAGGUgcccaCcUGGCCCGc -3'
miRNA:   3'- -UGAu--GGUCCGUGgUCUA-----GaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 232522 0.68 0.844395
Target:  5'- cGCUGgacuUCGGGCGCCAGuuUCUgggcgaggUGGCCUAc -3'
miRNA:   3'- -UGAU----GGUCCGUGGUCu-AGA--------ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 63962 0.68 0.859831
Target:  5'- aGCUGCUGGcGCggcgccauaACCAGAUCcUGGCCg- -3'
miRNA:   3'- -UGAUGGUC-CG---------UGGUCUAGaACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 128992 0.68 0.866522
Target:  5'- -aUGCUGGGCACCacgcuccAGAUCUcgcUGGCgCCGc -3'
miRNA:   3'- ugAUGGUCCGUGG-------UCUAGA---ACCG-GGU- -5'
14437 3' -56.4 NC_003521.1 + 28099 0.68 0.867255
Target:  5'- aGCcgAgCAGGCGCUcgcccaAGAUCgaGGCCCGa -3'
miRNA:   3'- -UGa-UgGUCCGUGG------UCUAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 167648 0.68 0.867255
Target:  5'- uGCcgGCCAGcuccGCGCCAGGUCgcaGGCCgAg -3'
miRNA:   3'- -UGa-UGGUC----CGUGGUCUAGaa-CCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.