miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 3' -56.4 NC_003521.1 + 6400 0.66 0.939354
Target:  5'- aGCUACCGcGGCGgcgaCGGGUCUUGccGCCUc -3'
miRNA:   3'- -UGAUGGU-CCGUg---GUCUAGAAC--CGGGu -5'
14437 3' -56.4 NC_003521.1 + 16283 0.67 0.888283
Target:  5'- cCUGCUGGGCGCCguGGGUgcCUaccGGCCCGg -3'
miRNA:   3'- uGAUGGUCCGUGG--UCUA--GAa--CCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 16500 0.66 0.939354
Target:  5'- cGCUACgagcaCGGGCugCGGcgCUcGGCUCGg -3'
miRNA:   3'- -UGAUG-----GUCCGugGUCuaGAaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 25654 0.71 0.718932
Target:  5'- --cAUCAGGCGgCAGAUCgugcUGGUCCAc -3'
miRNA:   3'- ugaUGGUCCGUgGUCUAGa---ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 25939 0.66 0.92439
Target:  5'- uGCUugCAGGgGCCAGgGUCUUGaGUuuGg -3'
miRNA:   3'- -UGAugGUCCgUGGUC-UAGAAC-CGggU- -5'
14437 3' -56.4 NC_003521.1 + 26273 0.72 0.639408
Target:  5'- cACcACCAGGCACCGGucUCgaGGCCa- -3'
miRNA:   3'- -UGaUGGUCCGUGGUCu-AGaaCCGGgu -5'
14437 3' -56.4 NC_003521.1 + 28099 0.68 0.867255
Target:  5'- aGCcgAgCAGGCGCUcgcccaAGAUCgaGGCCCGa -3'
miRNA:   3'- -UGa-UgGUCCGUGG------UCUAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 36686 0.74 0.530113
Target:  5'- aGCUgagGCCGGGCuCCGGcgCcUGGCCCGa -3'
miRNA:   3'- -UGA---UGGUCCGuGGUCuaGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 39150 0.67 0.894863
Target:  5'- uGCUGCCAccGGCgGCgCAGcUCgcGGCCCAg -3'
miRNA:   3'- -UGAUGGU--CCG-UG-GUCuAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 39876 0.67 0.894863
Target:  5'- gGCgAUCGGGCGCCguacaGGGUgUUGGCCg- -3'
miRNA:   3'- -UGaUGGUCCGUGG-----UCUAgAACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 54708 0.67 0.907355
Target:  5'- --aAUCGGGCGCgCacauggAGAUCUUGGCCgAg -3'
miRNA:   3'- ugaUGGUCCGUG-G------UCUAGAACCGGgU- -5'
14437 3' -56.4 NC_003521.1 + 58442 0.72 0.638403
Target:  5'- cGCUGCCGGGCgaacuuuccgcgcACCacgucgaccaGGGUCUgccaaUGGCCCAg -3'
miRNA:   3'- -UGAUGGUCCG-------------UGG----------UCUAGA-----ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 60986 0.66 0.92439
Target:  5'- --gACCAGGUgacgcucuACCAGAaCUUGGUCUc -3'
miRNA:   3'- ugaUGGUCCG--------UGGUCUaGAACCGGGu -5'
14437 3' -56.4 NC_003521.1 + 61570 0.7 0.774881
Target:  5'- cGCUGCuggccggcgaguuCAGGCGCCAGAa---GGCCCGc -3'
miRNA:   3'- -UGAUG-------------GUCCGUGGUCUagaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 63962 0.68 0.859831
Target:  5'- aGCUGCUGGcGCggcgccauaACCAGAUCcUGGCCg- -3'
miRNA:   3'- -UGAUGGUC-CG---------UGGUCUAGaACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 72030 0.66 0.943883
Target:  5'- cGCgugGCCu-GCACCAGGUCcUGGUgCAg -3'
miRNA:   3'- -UGa--UGGucCGUGGUCUAGaACCGgGU- -5'
14437 3' -56.4 NC_003521.1 + 74180 0.66 0.939354
Target:  5'- gACUgcGCCGcGGCGcCCGGcgCgcGGCCCGa -3'
miRNA:   3'- -UGA--UGGU-CCGU-GGUCuaGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 74397 0.68 0.844395
Target:  5'- cGCUGCCA--CGCCGGGUCU-GGCUCu -3'
miRNA:   3'- -UGAUGGUccGUGGUCUAGAaCCGGGu -5'
14437 3' -56.4 NC_003521.1 + 79220 0.66 0.939354
Target:  5'- gUUGCCcgaGGGCACCAGAU----GCCCGc -3'
miRNA:   3'- uGAUGG---UCCGUGGUCUAgaacCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 82672 1.08 0.004314
Target:  5'- gACUACCAGGCACCAGAUCUUGGCCCAc -3'
miRNA:   3'- -UGAUGGUCCGUGGUCUAGAACCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.