miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 7972 0.67 0.815584
Target:  5'- cGC-GGCCGggagGGUCCgcGGCGGCGGGGg- -3'
miRNA:   3'- aCGcCCGGU----UCAGG--UCGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 47432 0.67 0.815584
Target:  5'- -uCGGGCCAGGgcaCAuGCAGCcGGGCg -3'
miRNA:   3'- acGCCCGGUUCag-GU-CGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 134978 0.67 0.815584
Target:  5'- gGUGGGCUugugcAG-CCGGUAGCaGGGGCa -3'
miRNA:   3'- aCGCCCGGu----UCaGGUCGUUG-CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 92126 0.67 0.815584
Target:  5'- -cCGGGUgcGGUUCgGGCGGCGGGGCUu -3'
miRNA:   3'- acGCCCGguUCAGG-UCGUUGCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 99396 0.67 0.815584
Target:  5'- aGauGGUgAGGUCCAGCAGCGucuGCUc -3'
miRNA:   3'- aCgcCCGgUUCAGGUCGUUGCuc-CGA- -5'
14437 5' -58.7 NC_003521.1 + 196989 0.67 0.814747
Target:  5'- gUGaCGGGCCcgcGG-CCGGCGGCGGcugacccGGCUg -3'
miRNA:   3'- -AC-GCCCGGu--UCaGGUCGUUGCU-------CCGA- -5'
14437 5' -58.7 NC_003521.1 + 235482 0.67 0.813067
Target:  5'- -aCGGGCUuaccacuaucgccgGAGUCgCGGcCGGCGGGGCa -3'
miRNA:   3'- acGCCCGG--------------UUCAG-GUC-GUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 73761 0.67 0.807141
Target:  5'- aUGUGGGCCGGcaCCGGCGucAUGAGcGCc -3'
miRNA:   3'- -ACGCCCGGUUcaGGUCGU--UGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 97862 0.67 0.807141
Target:  5'- gUGCGGGCCAGGgagaCCAGgGGCccccGCUg -3'
miRNA:   3'- -ACGCCCGGUUCa---GGUCgUUGcuc-CGA- -5'
14437 5' -58.7 NC_003521.1 + 161733 0.67 0.807141
Target:  5'- cGCGaGGUCAucgCCAGCGugGGGGa- -3'
miRNA:   3'- aCGC-CCGGUucaGGUCGUugCUCCga -5'
14437 5' -58.7 NC_003521.1 + 119513 0.67 0.807141
Target:  5'- aUGcCGGGUCAGGUgCGGguACG-GGUUg -3'
miRNA:   3'- -AC-GCCCGGUUCAgGUCguUGCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 49983 0.67 0.807141
Target:  5'- gGUGGGUCGAGggagCCGGgucgucCAGCGAGGaCa -3'
miRNA:   3'- aCGCCCGGUUCa---GGUC------GUUGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 152266 0.67 0.807141
Target:  5'- cGCGGGCCAgcuGGUgcCCuGCcccGAgGAGGCc -3'
miRNA:   3'- aCGCCCGGU---UCA--GGuCG---UUgCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 88675 0.67 0.807141
Target:  5'- gGUGGGCCGgcGGcCCGGCu-CGGGGaCa -3'
miRNA:   3'- aCGCCCGGU--UCaGGUCGuuGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 175039 0.67 0.807141
Target:  5'- gGCcGGCCGAaguuGUCCGGCGGCGGugugaugcGGCc -3'
miRNA:   3'- aCGcCCGGUU----CAGGUCGUUGCU--------CCGa -5'
14437 5' -58.7 NC_003521.1 + 140074 0.67 0.807141
Target:  5'- aGUGcGCCAGGcCCAGCu-CGGGGUg -3'
miRNA:   3'- aCGCcCGGUUCaGGUCGuuGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 140991 0.67 0.807141
Target:  5'- aGCuGGCCcucUCCAGCAACaAGGCc -3'
miRNA:   3'- aCGcCCGGuucAGGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 219292 0.67 0.807141
Target:  5'- aGCGGGCCcaugAAGgCCAGCGuguuGGGCa -3'
miRNA:   3'- aCGCCCGG----UUCaGGUCGUugc-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 43803 0.67 0.79855
Target:  5'- gGgGGGCCGccauGUCgCAGCAGCcGGGUc -3'
miRNA:   3'- aCgCCCGGUu---CAG-GUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 207123 0.67 0.79855
Target:  5'- cGCuuGGGCgGAGUCCAgcuGCAGCGuuacgugcGGGCc -3'
miRNA:   3'- aCG--CCCGgUUCAGGU---CGUUGC--------UCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.