miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 168998 0.66 0.847736
Target:  5'- cGCGGGa--GG-CgGGCGACGGGGCc -3'
miRNA:   3'- aCGCCCgguUCaGgUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 234142 0.67 0.839955
Target:  5'- cGCGGGCgCAGGcCCuGCAgcACGA-GCg -3'
miRNA:   3'- aCGCCCG-GUUCaGGuCGU--UGCUcCGa -5'
14437 5' -58.7 NC_003521.1 + 221344 0.67 0.839955
Target:  5'- aGCGGGCCAccugcaccuGG-CCGcGCAGCGAcauGGUc -3'
miRNA:   3'- aCGCCCGGU---------UCaGGU-CGUUGCU---CCGa -5'
14437 5' -58.7 NC_003521.1 + 99264 0.67 0.839955
Target:  5'- cGCGcGCgAGGUCCAGaca-GAGGCg -3'
miRNA:   3'- aCGCcCGgUUCAGGUCguugCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 5407 0.67 0.839955
Target:  5'- cGgGGGCCucGcCCGagGACGAGGCg -3'
miRNA:   3'- aCgCCCGGuuCaGGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 38204 0.67 0.831998
Target:  5'- cGCGGuCgAGGUCgGGCAG-GAGGCg -3'
miRNA:   3'- aCGCCcGgUUCAGgUCGUUgCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 104906 0.67 0.831998
Target:  5'- cGCGGccgugGCCGAGgCCGGCAcaaagACGGGGg- -3'
miRNA:   3'- aCGCC-----CGGUUCaGGUCGU-----UGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 234925 0.67 0.831998
Target:  5'- cGCGGuaCAgcAGUagCAGCAGCGAGGaCg -3'
miRNA:   3'- aCGCCcgGU--UCAg-GUCGUUGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 238432 0.67 0.831998
Target:  5'- cGCGGuCgAGGUCgGGCAG-GAGGCg -3'
miRNA:   3'- aCGCCcGgUUCAGgUCGUUgCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 122647 0.67 0.831998
Target:  5'- cGCauGGGCagCAGGUCCuggagcGCGAuCGAGGCg -3'
miRNA:   3'- aCG--CCCG--GUUCAGGu-----CGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 144059 0.67 0.831998
Target:  5'- cUGCauGGCCGAG-CUGGCGGCGcuGGGCa -3'
miRNA:   3'- -ACGc-CCGGUUCaGGUCGUUGC--UCCGa -5'
14437 5' -58.7 NC_003521.1 + 149425 0.67 0.829578
Target:  5'- cUGUGGGCCGggauuugggucgggGGUCCGGgccCGGGGUUc -3'
miRNA:   3'- -ACGCCCGGU--------------UCAGGUCguuGCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 103501 0.67 0.823872
Target:  5'- gGCGaaaGGgCGAGcCCAGCAGC-AGGCg -3'
miRNA:   3'- aCGC---CCgGUUCaGGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 98527 0.67 0.823872
Target:  5'- cGCGcGGCUggG-CCGcuGCAGCGGcGGCg -3'
miRNA:   3'- aCGC-CCGGuuCaGGU--CGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 102951 0.67 0.823872
Target:  5'- cGCGGuCCAGGcgcUCgGGCGuCGGGGCUc -3'
miRNA:   3'- aCGCCcGGUUC---AGgUCGUuGCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 111171 0.67 0.821402
Target:  5'- aGCGcGGCCGcc-CCGGCGACGgcgccgcggacgguGGGCUg -3'
miRNA:   3'- aCGC-CCGGUucaGGUCGUUGC--------------UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 36686 0.67 0.818918
Target:  5'- aGCuGaGGCCGGGcUCCGGCgccuggcccgagcagGugGAGGCg -3'
miRNA:   3'- aCG-C-CCGGUUC-AGGUCG---------------UugCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 99396 0.67 0.815584
Target:  5'- aGauGGUgAGGUCCAGCAGCGucuGCUc -3'
miRNA:   3'- aCgcCCGgUUCAGGUCGUUGCuc-CGA- -5'
14437 5' -58.7 NC_003521.1 + 47432 0.67 0.815584
Target:  5'- -uCGGGCCAGGgcaCAuGCAGCcGGGCg -3'
miRNA:   3'- acGCCCGGUUCag-GU-CGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 134978 0.67 0.815584
Target:  5'- gGUGGGCUugugcAG-CCGGUAGCaGGGGCa -3'
miRNA:   3'- aCGCCCGGu----UCaGGUCGUUG-CUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.