Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 208610 | 0.66 | 0.869963 |
Target: 5'- uUGCGGcgGCCAuagccAGUCaccGCggUGAGGCa -3' miRNA: 3'- -ACGCC--CGGU-----UCAGgu-CGuuGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 88675 | 0.67 | 0.807141 |
Target: 5'- gGUGGGCCGgcGGcCCGGCu-CGGGGaCa -3' miRNA: 3'- aCGCCCGGU--UCaGGUCGuuGCUCC-Ga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 119513 | 0.67 | 0.807141 |
Target: 5'- aUGcCGGGUCAGGUgCGGguACG-GGUUg -3' miRNA: 3'- -AC-GCCCGGUUCAgGUCguUGCuCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 235482 | 0.67 | 0.813067 |
Target: 5'- -aCGGGCUuaccacuaucgccgGAGUCgCGGcCGGCGGGGCa -3' miRNA: 3'- acGCCCGG--------------UUCAG-GUC-GUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 99396 | 0.67 | 0.815584 |
Target: 5'- aGauGGUgAGGUCCAGCAGCGucuGCUc -3' miRNA: 3'- aCgcCCGgUUCAGGUCGUUGCuc-CGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 47432 | 0.67 | 0.815584 |
Target: 5'- -uCGGGCCAGGgcaCAuGCAGCcGGGCg -3' miRNA: 3'- acGCCCGGUUCag-GU-CGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 111171 | 0.67 | 0.821402 |
Target: 5'- aGCGcGGCCGcc-CCGGCGACGgcgccgcggacgguGGGCUg -3' miRNA: 3'- aCGC-CCGGUucaGGUCGUUGC--------------UCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 92126 | 0.67 | 0.815584 |
Target: 5'- -cCGGGUgcGGUUCgGGCGGCGGGGCUu -3' miRNA: 3'- acGCCCGguUCAGG-UCGUUGCUCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 134978 | 0.67 | 0.815584 |
Target: 5'- gGUGGGCUugugcAG-CCGGUAGCaGGGGCa -3' miRNA: 3'- aCGCCCGGu----UCaGGUCGUUG-CUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 73761 | 0.67 | 0.807141 |
Target: 5'- aUGUGGGCCGGcaCCGGCGucAUGAGcGCc -3' miRNA: 3'- -ACGCCCGGUUcaGGUCGU--UGCUC-CGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 219292 | 0.67 | 0.807141 |
Target: 5'- aGCGGGCCcaugAAGgCCAGCGuguuGGGCa -3' miRNA: 3'- aCGCCCGG----UUCaGGUCGUugc-UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 140991 | 0.67 | 0.807141 |
Target: 5'- aGCuGGCCcucUCCAGCAACaAGGCc -3' miRNA: 3'- aCGcCCGGuucAGGUCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 38204 | 0.67 | 0.831998 |
Target: 5'- cGCGGuCgAGGUCgGGCAG-GAGGCg -3' miRNA: 3'- aCGCCcGgUUCAGgUCGUUgCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 5407 | 0.67 | 0.839955 |
Target: 5'- cGgGGGCCucGcCCGagGACGAGGCg -3' miRNA: 3'- aCgCCCGGuuCaGGUcgUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 104906 | 0.67 | 0.831998 |
Target: 5'- cGCGGccgugGCCGAGgCCGGCAcaaagACGGGGg- -3' miRNA: 3'- aCGCC-----CGGUUCaGGUCGU-----UGCUCCga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 221344 | 0.67 | 0.839955 |
Target: 5'- aGCGGGCCAccugcaccuGG-CCGcGCAGCGAcauGGUc -3' miRNA: 3'- aCGCCCGGU---------UCaGGU-CGUUGCU---CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 234925 | 0.67 | 0.831998 |
Target: 5'- cGCGGuaCAgcAGUagCAGCAGCGAGGaCg -3' miRNA: 3'- aCGCCcgGU--UCAg-GUCGUUGCUCC-Ga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 149425 | 0.67 | 0.829578 |
Target: 5'- cUGUGGGCCGggauuugggucgggGGUCCGGgccCGGGGUUc -3' miRNA: 3'- -ACGCCCGGU--------------UCAGGUCguuGCUCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 43803 | 0.67 | 0.79855 |
Target: 5'- gGgGGGCCGccauGUCgCAGCAGCcGGGUc -3' miRNA: 3'- aCgCCCGGUu---CAG-GUCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 140074 | 0.67 | 0.807141 |
Target: 5'- aGUGcGCCAGGcCCAGCu-CGGGGUg -3' miRNA: 3'- aCGCcCGGUUCaGGUCGuuGCUCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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