Results 21 - 40 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 240633 | 0.66 | 0.857578 |
Target: 5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3' miRNA: 3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 127679 | 0.66 | 0.862746 |
Target: 5'- aGCaGGCggCGGGUCCAG-AGCGAGaGCa -3' miRNA: 3'- aCGcCCG--GUUCAGGUCgUUGCUC-CGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 99825 | 0.66 | 0.862746 |
Target: 5'- gUGCuGGGCCuuguugcuggaGAGggCCAGCucuACGuGGCUc -3' miRNA: 3'- -ACG-CCCGG-----------UUCa-GGUCGu--UGCuCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 229243 | 0.66 | 0.862746 |
Target: 5'- cGCGGGCCGcggaGGUgCuuGCggUGAGGg- -3' miRNA: 3'- aCGCCCGGU----UCAgGu-CGuuGCUCCga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 204686 | 0.66 | 0.869963 |
Target: 5'- -uCGGGCaGGGUCgacgagGGCAGCGAGGUg -3' miRNA: 3'- acGCCCGgUUCAGg-----UCGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 188492 | 0.66 | 0.847736 |
Target: 5'- cGUGGGCCuGGGUCCGccGCcgagauACGAGGa- -3' miRNA: 3'- aCGCCCGG-UUCAGGU--CGu-----UGCUCCga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 155450 | 0.66 | 0.883797 |
Target: 5'- cGCuGGgCGAGUCgCAGCAGCccgucGAGGUc -3' miRNA: 3'- aCGcCCgGUUCAG-GUCGUUG-----CUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 38309 | 0.66 | 0.869963 |
Target: 5'- uUGCaGGCCGAGgcaCGGCcaagGGCGAuGGCg -3' miRNA: 3'- -ACGcCCGGUUCag-GUCG----UUGCU-CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 124208 | 0.66 | 0.883797 |
Target: 5'- aGCGGGCCcuuucuGG-CCcGCGACcGGGCc -3' miRNA: 3'- aCGCCCGGu-----UCaGGuCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 152836 | 0.66 | 0.883797 |
Target: 5'- cGCGcGCCcccagauucaccGAGUCCucGCGccGCGAGGCg -3' miRNA: 3'- aCGCcCGG------------UUCAGGu-CGU--UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 95216 | 0.66 | 0.847736 |
Target: 5'- -cCGGGUgCGAcUgCAGCAGCGAGGCc -3' miRNA: 3'- acGCCCG-GUUcAgGUCGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 97557 | 0.66 | 0.876982 |
Target: 5'- cGCGGGUCGcaGGUCaGGCcgcggAugGAGGUg -3' miRNA: 3'- aCGCCCGGU--UCAGgUCG-----UugCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 182965 | 0.66 | 0.862746 |
Target: 5'- gGCGaauCCGuGUCUAGCAGCGAcGGCg -3' miRNA: 3'- aCGCcc-GGUuCAGGUCGUUGCU-CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 46258 | 0.66 | 0.869963 |
Target: 5'- aGCGGcCCAAG-CUAuuuCGACGAGGCg -3' miRNA: 3'- aCGCCcGGUUCaGGUc--GUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 111112 | 0.66 | 0.847736 |
Target: 5'- cGaCGGGCCGcGgCCGGCAgaaGCG-GGCg -3' miRNA: 3'- aC-GCCCGGUuCaGGUCGU---UGCuCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 222050 | 0.66 | 0.855335 |
Target: 5'- gGCGGGgggcaCCAGccGUCgCAGCAGCGAcccgucGGCg -3' miRNA: 3'- aCGCCC-----GGUU--CAG-GUCGUUGCU------CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 84 | 0.66 | 0.857578 |
Target: 5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3' miRNA: 3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 201389 | 0.66 | 0.855335 |
Target: 5'- cGcCGGGCUcGG-CCGGCAGCGGcauuuucucGGCg -3' miRNA: 3'- aC-GCCCGGuUCaGGUCGUUGCU---------CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 211320 | 0.66 | 0.883797 |
Target: 5'- cGCGGGUCAacaggcGGUCCcGCGggcGCGAguGGUUg -3' miRNA: 3'- aCGCCCGGU------UCAGGuCGU---UGCU--CCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 223318 | 0.66 | 0.883797 |
Target: 5'- cGcCGGGCCGGGaaccgccgugaCCGGCGGCGccGCUa -3' miRNA: 3'- aC-GCCCGGUUCa----------GGUCGUUGCucCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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