miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 115744 0.73 0.511422
Target:  5'- uUGCGGGCCAGGUCCu----CGGGGa- -3'
miRNA:   3'- -ACGCCCGGUUCAGGucguuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 82774 0.73 0.511422
Target:  5'- gGCGGGCCGuGgagCaCAGgGACGAGGUg -3'
miRNA:   3'- aCGCCCGGUuCa--G-GUCgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 119966 0.72 0.530342
Target:  5'- cGCGgccgccucaaGGCCGAGUCCAGCAuggcaccCGAGGa- -3'
miRNA:   3'- aCGC----------CCGGUUCAGGUCGUu------GCUCCga -5'
14437 5' -58.7 NC_003521.1 + 86253 0.72 0.530342
Target:  5'- gUGCaGGGCgAAGUCgGcCGGCGAGGCg -3'
miRNA:   3'- -ACG-CCCGgUUCAGgUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 75015 0.72 0.539898
Target:  5'- cGUGGGCCAGGaCCccuacugcgacGGCAGCGccagcGGGCUg -3'
miRNA:   3'- aCGCCCGGUUCaGG-----------UCGUUGC-----UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 34525 0.72 0.549511
Target:  5'- cGCGGGCCGAGacgcgCgAGCGGCGAcagaguucGGCc -3'
miRNA:   3'- aCGCCCGGUUCa----GgUCGUUGCU--------CCGa -5'
14437 5' -58.7 NC_003521.1 + 153174 0.72 0.549511
Target:  5'- cGUGGGCUgcGccUCCAGCcuguGCGAGGCc -3'
miRNA:   3'- aCGCCCGGuuC--AGGUCGu---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 39441 0.72 0.549511
Target:  5'- cUGCcGGCCGAGcCCGGCGcCGAGGg- -3'
miRNA:   3'- -ACGcCCGGUUCaGGUCGUuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 113849 0.72 0.56889
Target:  5'- aGCGGGgCGg--CCGGCGACGAcGGCg -3'
miRNA:   3'- aCGCCCgGUucaGGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 96701 0.71 0.578644
Target:  5'- gGCGcaccucguccaGGCCGcggcGGUCCAGCAGCcgcauGAGGCa -3'
miRNA:   3'- aCGC-----------CCGGU----UCAGGUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 145873 0.71 0.578644
Target:  5'- gGCGGGCggcgccgacgaCGAGgccgCCGGCGGCGGGaGCa -3'
miRNA:   3'- aCGCCCG-----------GUUCa---GGUCGUUGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 100757 0.71 0.578644
Target:  5'- aGCuGGGCCuGGcgcacUCguGCAACGAGGCc -3'
miRNA:   3'- aCG-CCCGGuUC-----AGguCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 32385 0.71 0.592359
Target:  5'- cGCGuGGCCAGGUCCucgggcgugcgacacAGCAGCccguGGCg -3'
miRNA:   3'- aCGC-CCGGUUCAGG---------------UCGUUGcu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 131095 0.71 0.598254
Target:  5'- cGCGGGC----UCCGGaCGGCGGGGCg -3'
miRNA:   3'- aCGCCCGguucAGGUC-GUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 17162 0.71 0.608096
Target:  5'- cGCGaGGCCGAGgcgcagcgCUGGCAGCuGGGCa -3'
miRNA:   3'- aCGC-CCGGUUCa-------GGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 95727 0.71 0.617956
Target:  5'- --aGGcGCCAGGUCCAGCAG-GcGGCUg -3'
miRNA:   3'- acgCC-CGGUUCAGGUCGUUgCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 195357 0.71 0.617956
Target:  5'- gGUGGGCCGGGUgaaggugacgcCCGagGACGAGGCg -3'
miRNA:   3'- aCGCCCGGUUCA-----------GGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 221802 0.71 0.617956
Target:  5'- gGCGGGCaUggGcUCCGuCGGCGGGGCg -3'
miRNA:   3'- aCGCCCG-GuuC-AGGUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 122521 0.71 0.627825
Target:  5'- gGCGGG-CAGG-CCGGCGGCGGuGGUa -3'
miRNA:   3'- aCGCCCgGUUCaGGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 17641 0.71 0.627825
Target:  5'- cUGCGGaGCUAcGUacgCCAGCAcCGGGGCa -3'
miRNA:   3'- -ACGCC-CGGUuCA---GGUCGUuGCUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.