miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 35218 0.7 0.647566
Target:  5'- cGCGGGUCGGaUCgAGCGuccuCGGGGCg -3'
miRNA:   3'- aCGCCCGGUUcAGgUCGUu---GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 36686 0.67 0.818918
Target:  5'- aGCuGaGGCCGGGcUCCGGCgccuggcccgagcagGugGAGGCg -3'
miRNA:   3'- aCG-C-CCGGUUC-AGGUCG---------------UugCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 38204 0.67 0.831998
Target:  5'- cGCGGuCgAGGUCgGGCAG-GAGGCg -3'
miRNA:   3'- aCGCCcGgUUCAGgUCGUUgCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 38258 0.68 0.780957
Target:  5'- cGCGGcCCAGGgUCAGCAGCcccagGAGGCc -3'
miRNA:   3'- aCGCCcGGUUCaGGUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 38309 0.66 0.869963
Target:  5'- uUGCaGGCCGAGgcaCGGCcaagGGCGAuGGCg -3'
miRNA:   3'- -ACGcCCGGUUCag-GUCG----UUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 39441 0.72 0.549511
Target:  5'- cUGCcGGCCGAGcCCGGCGcCGAGGg- -3'
miRNA:   3'- -ACGcCCGGUUCaGGUCGUuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 40753 0.73 0.483588
Target:  5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3'
miRNA:   3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 43803 0.67 0.79855
Target:  5'- gGgGGGCCGccauGUCgCAGCAGCcGGGUc -3'
miRNA:   3'- aCgCCCGGUu---CAG-GUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 44360 0.73 0.501135
Target:  5'- -aCGGGCCGAGUgCCAGCGgagguucGCGcGGCa -3'
miRNA:   3'- acGCCCGGUUCA-GGUCGU-------UGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 46258 0.66 0.869963
Target:  5'- aGCGGcCCAAG-CUAuuuCGACGAGGCg -3'
miRNA:   3'- aCGCCcGGUUCaGGUc--GUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 46411 0.78 0.261742
Target:  5'- cGCGGGCCAGGaagCGGCGACG-GGCg -3'
miRNA:   3'- aCGCCCGGUUCag-GUCGUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 47432 0.67 0.815584
Target:  5'- -uCGGGCCAGGgcaCAuGCAGCcGGGCg -3'
miRNA:   3'- acGCCCGGUUCag-GU-CGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 49006 0.68 0.762866
Target:  5'- cUGCGGgacGCCGAGUCCAuGCAgacgugagagagACGAagacGGCa -3'
miRNA:   3'- -ACGCC---CGGUUCAGGU-CGU------------UGCU----CCGa -5'
14437 5' -58.7 NC_003521.1 + 49854 0.66 0.883797
Target:  5'- cGCucGGCCucGUCCAGCAugcucAUGAuGGCg -3'
miRNA:   3'- aCGc-CCGGuuCAGGUCGU-----UGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 49983 0.67 0.807141
Target:  5'- gGUGGGUCGAGggagCCGGgucgucCAGCGAGGaCa -3'
miRNA:   3'- aCGCCCGGUUCa---GGUC------GUUGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 52237 0.76 0.357155
Target:  5'- gGCGGGCUAcAGUUgGGCAGCGgcAGGCg -3'
miRNA:   3'- aCGCCCGGU-UCAGgUCGUUGC--UCCGa -5'
14437 5' -58.7 NC_003521.1 + 54209 0.68 0.744344
Target:  5'- cUGCuGGCCGguGGUCCGGCAguaccgacuGCcGGGCg -3'
miRNA:   3'- -ACGcCCGGU--UCAGGUCGU---------UGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 56248 0.66 0.876982
Target:  5'- aUGUcgGGGCUGAGgcaggCCGGCAGgcaGAGGUUg -3'
miRNA:   3'- -ACG--CCCGGUUCa----GGUCGUUg--CUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 58756 0.76 0.342139
Target:  5'- cUGCGGGCUgAGGUCCAGCcacuGCaGGGCg -3'
miRNA:   3'- -ACGCCCGG-UUCAGGUCGu---UGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 59434 0.7 0.68685
Target:  5'- aGCGGcGCCGccgCCGGCAGCGAG-CUc -3'
miRNA:   3'- aCGCC-CGGUucaGGUCGUUGCUCcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.