miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 64746 0.66 0.883797
Target:  5'- cGcCGuGGCCAAGacgCCGGCcGGCGcGGCa -3'
miRNA:   3'- aC-GC-CCGGUUCa--GGUCG-UUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 66880 0.7 0.657423
Target:  5'- cUGU-GGCCGAGaCCAGUGACGAGGa- -3'
miRNA:   3'- -ACGcCCGGUUCaGGUCGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 68491 0.68 0.753655
Target:  5'- gUGUGccacaggacGGCCGAGgccugcgCCAGCGGCGucaAGGCUg -3'
miRNA:   3'- -ACGC---------CCGGUUCa------GGUCGUUGC---UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 69740 0.67 0.79855
Target:  5'- gGCGGGCgGGGa--GGCGGCGGuGGCa -3'
miRNA:   3'- aCGCCCGgUUCaggUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 70304 0.77 0.299864
Target:  5'- aGCGGuG-CAGGUcgcCCAGCAGCGAGGCg -3'
miRNA:   3'- aCGCC-CgGUUCA---GGUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 73761 0.67 0.807141
Target:  5'- aUGUGGGCCGGcaCCGGCGucAUGAGcGCc -3'
miRNA:   3'- -ACGCCCGGUUcaGGUCGU--UGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 75015 0.72 0.539898
Target:  5'- cGUGGGCCAGGaCCccuacugcgacGGCAGCGccagcGGGCUg -3'
miRNA:   3'- aCGCCCGGUUCaGG-----------UCGUUGC-----UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 76297 0.75 0.380533
Target:  5'- cUGCGaGuCCGGGUCCGGCAGCgGAGGUg -3'
miRNA:   3'- -ACGCcC-GGUUCAGGUCGUUG-CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 82707 1.08 0.002693
Target:  5'- aUGCGGGCCAAGUCCAGCAACGAGGCUg -3'
miRNA:   3'- -ACGCCCGGUUCAGGUCGUUGCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 82774 0.73 0.511422
Target:  5'- gGCGGGCCGuGgagCaCAGgGACGAGGUg -3'
miRNA:   3'- aCGCCCGGUuCa--G-GUCgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 86253 0.72 0.530342
Target:  5'- gUGCaGGGCgAAGUCgGcCGGCGAGGCg -3'
miRNA:   3'- -ACG-CCCGgUUCAGgUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 86698 0.73 0.492788
Target:  5'- gGCGGGCCGcGg-CGGCGacgACGAGGCg -3'
miRNA:   3'- aCGCCCGGUuCagGUCGU---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 87775 0.73 0.492788
Target:  5'- cGCaGGCCAGGgCCAGguGCuGAGGCc -3'
miRNA:   3'- aCGcCCGGUUCaGGUCguUG-CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 88675 0.67 0.807141
Target:  5'- gGUGGGCCGgcGGcCCGGCu-CGGGGaCa -3'
miRNA:   3'- aCGCCCGGU--UCaGGUCGuuGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 92126 0.67 0.815584
Target:  5'- -cCGGGUgcGGUUCgGGCGGCGGGGCUu -3'
miRNA:   3'- acGCCCGguUCAGG-UCGUUGCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 95216 0.66 0.847736
Target:  5'- -cCGGGUgCGAcUgCAGCAGCGAGGCc -3'
miRNA:   3'- acGCCCG-GUUcAgGUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 95727 0.71 0.617956
Target:  5'- --aGGcGCCAGGUCCAGCAG-GcGGCUg -3'
miRNA:   3'- acgCC-CGGUUCAGGUCGUUgCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 96701 0.71 0.578644
Target:  5'- gGCGcaccucguccaGGCCGcggcGGUCCAGCAGCcgcauGAGGCa -3'
miRNA:   3'- aCGC-----------CCGGU----UCAGGUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 97557 0.66 0.876982
Target:  5'- cGCGGGUCGcaGGUCaGGCcgcggAugGAGGUg -3'
miRNA:   3'- aCGCCCGGU--UCAGgUCG-----UugCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 97862 0.67 0.807141
Target:  5'- gUGCGGGCCAGGgagaCCAGgGGCccccGCUg -3'
miRNA:   3'- -ACGCCCGGUUCa---GGUCgUUGcuc-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.