Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 52237 | 0.76 | 0.357155 |
Target: 5'- gGCGGGCUAcAGUUgGGCAGCGgcAGGCg -3' miRNA: 3'- aCGCCCGGU-UCAGgUCGUUGC--UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 58756 | 0.76 | 0.342139 |
Target: 5'- cUGCGGGCUgAGGUCCAGCcacuGCaGGGCg -3' miRNA: 3'- -ACGCCCGG-UUCAGGUCGu---UGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 5824 | 0.76 | 0.342139 |
Target: 5'- gGUGGuGCCGGGUcCCGGCGAcCGGGGCc -3' miRNA: 3'- aCGCC-CGGUUCA-GGUCGUU-GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 154659 | 0.77 | 0.299864 |
Target: 5'- cGCuGGCCGAGgCCGGCAGCGAGacGCUg -3' miRNA: 3'- aCGcCCGGUUCaGGUCGUUGCUC--CGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 70304 | 0.77 | 0.299864 |
Target: 5'- aGCGGuG-CAGGUcgcCCAGCAGCGAGGCg -3' miRNA: 3'- aCGCC-CgGUUCA---GGUCGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 145873 | 0.71 | 0.578644 |
Target: 5'- gGCGGGCggcgccgacgaCGAGgccgCCGGCGGCGGGaGCa -3' miRNA: 3'- aCGCCCG-----------GUUCa---GGUCGUUGCUC-CGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 32385 | 0.71 | 0.592359 |
Target: 5'- cGCGuGGCCAGGUCCucgggcgugcgacacAGCAGCccguGGCg -3' miRNA: 3'- aCGC-CCGGUUCAGG---------------UCGUUGcu--CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 119786 | 0.69 | 0.734942 |
Target: 5'- cUGCGGuCCAccuUCCGGCGccaGCGGGGCg -3' miRNA: 3'- -ACGCCcGGUuc-AGGUCGU---UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 168562 | 0.69 | 0.72926 |
Target: 5'- gGCGGGCUgcGGGUaagguggcggcugacCCAGCGGCGgcauggacauGGGCUg -3' miRNA: 3'- aCGCCCGG--UUCA---------------GGUCGUUGC----------UCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 125889 | 0.69 | 0.715897 |
Target: 5'- -aCGGGuCCAcGcCCAGCAugcACGAGGCc -3' miRNA: 3'- acGCCC-GGUuCaGGUCGU---UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 115373 | 0.69 | 0.696585 |
Target: 5'- cGCuGGCCAGGgCCGGCAuguGCaGGGCg -3' miRNA: 3'- aCGcCCGGUUCaGGUCGU---UGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 34177 | 0.69 | 0.696585 |
Target: 5'- cGCGGGCCAAcuuGaCCAGCuuauCGuGGCc -3' miRNA: 3'- aCGCCCGGUU---CaGGUCGuu--GCuCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 166868 | 0.69 | 0.695614 |
Target: 5'- gGCGGGCgcaggucguacauCAAGUCCgcgGGCGcGCGGGGUa -3' miRNA: 3'- aCGCCCG-------------GUUCAGG---UCGU-UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 59434 | 0.7 | 0.68685 |
Target: 5'- aGCGGcGCCGccgCCGGCAGCGAG-CUc -3' miRNA: 3'- aCGCC-CGGUucaGGUCGUUGCUCcGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 117490 | 0.7 | 0.657423 |
Target: 5'- cGaCGGGCCu-GUCCGGCGggGCGuacGGCg -3' miRNA: 3'- aC-GCCCGGuuCAGGUCGU--UGCu--CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 34140 | 0.7 | 0.657423 |
Target: 5'- aGCaGGGCCAGGcCCAcGCGcACGaAGGCc -3' miRNA: 3'- aCG-CCCGGUUCaGGU-CGU-UGC-UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 35218 | 0.7 | 0.647566 |
Target: 5'- cGCGGGUCGGaUCgAGCGuccuCGGGGCg -3' miRNA: 3'- aCGCCCGGUUcAGgUCGUu---GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 135217 | 0.7 | 0.637698 |
Target: 5'- aGUGGGCCucGUCCaccAGCAGC-AGGUg -3' miRNA: 3'- aCGCCCGGuuCAGG---UCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 221802 | 0.71 | 0.617956 |
Target: 5'- gGCGGGCaUggGcUCCGuCGGCGGGGCg -3' miRNA: 3'- aCGCCCG-GuuC-AGGUcGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 131095 | 0.71 | 0.598254 |
Target: 5'- cGCGGGC----UCCGGaCGGCGGGGCg -3' miRNA: 3'- aCGCCCGguucAGGUC-GUUGCUCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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