miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 215292 0.68 0.780957
Target:  5'- gGCaGGCCAccgCCAGCGGCGgcAGGUUg -3'
miRNA:   3'- aCGcCCGGUucaGGUCGUUGC--UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 212285 0.68 0.771969
Target:  5'- gGCuGGCCAGGgcgaaggCCGGCAugggcACGcAGGCg -3'
miRNA:   3'- aCGcCCGGUUCa------GGUCGU-----UGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 211320 0.66 0.883797
Target:  5'- cGCGGGUCAacaggcGGUCCcGCGggcGCGAguGGUUg -3'
miRNA:   3'- aCGCCCGGU------UCAGGuCGU---UGCU--CCGA- -5'
14437 5' -58.7 NC_003521.1 + 208610 0.66 0.869963
Target:  5'- uUGCGGcgGCCAuagccAGUCaccGCggUGAGGCa -3'
miRNA:   3'- -ACGCC--CGGU-----UCAGgu-CGuuGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 207932 0.68 0.78982
Target:  5'- gGCGGGCaCGGcGgcagcaCCGGCGGCGcGGGCg -3'
miRNA:   3'- aCGCCCG-GUU-Ca-----GGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 207123 0.67 0.79855
Target:  5'- cGCuuGGGCgGAGUCCAgcuGCAGCGuuacgugcGGGCc -3'
miRNA:   3'- aCG--CCCGgUUCAGGU---CGUUGC--------UCCGa -5'
14437 5' -58.7 NC_003521.1 + 207045 0.74 0.430254
Target:  5'- cGCGGGCagccCAAGUUCAGCAGCcucuGGCg -3'
miRNA:   3'- aCGCCCG----GUUCAGGUCGUUGcu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 204686 0.66 0.869963
Target:  5'- -uCGGGCaGGGUCgacgagGGCAGCGAGGUg -3'
miRNA:   3'- acGCCCGgUUCAGg-----UCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 201389 0.66 0.855335
Target:  5'- cGcCGGGCUcGG-CCGGCAGCGGcauuuucucGGCg -3'
miRNA:   3'- aC-GCCCGGuUCaGGUCGUUGCU---------CCGa -5'
14437 5' -58.7 NC_003521.1 + 200312 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 199366 0.68 0.76195
Target:  5'- cGUGGGCCAccaccguGGUguagaCGGCGGCGGGGg- -3'
miRNA:   3'- aCGCCCGGU-------UCAg----GUCGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 198728 0.7 0.68685
Target:  5'- cGCGGGCUuGGUgCCAG--ACGAGGUc -3'
miRNA:   3'- aCGCCCGGuUCA-GGUCguUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 196989 0.67 0.814747
Target:  5'- gUGaCGGGCCcgcGG-CCGGCGGCGGcugacccGGCUg -3'
miRNA:   3'- -AC-GCCCGGu--UCaGGUCGUUGCU-------CCGA- -5'
14437 5' -58.7 NC_003521.1 + 195357 0.71 0.617956
Target:  5'- gGUGGGCCGGGUgaaggugacgcCCGagGACGAGGCg -3'
miRNA:   3'- aCGCCCGGUUCA-----------GGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 193225 0.66 0.86925
Target:  5'- gGC-GGCCAAGUCgGGCGGgagcgccUGGGGUa -3'
miRNA:   3'- aCGcCCGGUUCAGgUCGUU-------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 188492 0.66 0.847736
Target:  5'- cGUGGGCCuGGGUCCGccGCcgagauACGAGGa- -3'
miRNA:   3'- aCGCCCGG-UUCAGGU--CGu-----UGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 187059 0.69 0.734942
Target:  5'- gGCGGGaaGGGUgCCAGCgAGCGgaGGGCg -3'
miRNA:   3'- aCGCCCggUUCA-GGUCG-UUGC--UCCGa -5'
14437 5' -58.7 NC_003521.1 + 185579 0.71 0.627825
Target:  5'- cGCGGGCUcg--CCGGCGAgccgcuCGGGGCUg -3'
miRNA:   3'- aCGCCCGGuucaGGUCGUU------GCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 184360 0.67 0.815584
Target:  5'- gGCGGGCCGuggcgcGGcgCCucucggaccugGGCcACGAGGCg -3'
miRNA:   3'- aCGCCCGGU------UCa-GG-----------UCGuUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 182965 0.66 0.862746
Target:  5'- gGCGaauCCGuGUCUAGCAGCGAcGGCg -3'
miRNA:   3'- aCGCcc-GGUuCAGGUCGUUGCU-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.