miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 240633 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 238486 0.68 0.780957
Target:  5'- cGCGGcCCAGGgUCAGCAGCcccagGAGGCc -3'
miRNA:   3'- aCGCCcGGUUCaGGUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 238432 0.67 0.831998
Target:  5'- cGCGGuCgAGGUCgGGCAG-GAGGCg -3'
miRNA:   3'- aCGCCcGgUUCAGgUCGUUgCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 236465 0.73 0.502067
Target:  5'- cGCGGGCCGcgaugAGcgaaccgCCGGCGGCGGuGGCg -3'
miRNA:   3'- aCGCCCGGU-----UCa------GGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 235482 0.67 0.813067
Target:  5'- -aCGGGCUuaccacuaucgccgGAGUCgCGGcCGGCGGGGCa -3'
miRNA:   3'- acGCCCGG--------------UUCAG-GUC-GUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 234925 0.67 0.831998
Target:  5'- cGCGGuaCAgcAGUagCAGCAGCGAGGaCg -3'
miRNA:   3'- aCGCCcgGU--UCAg-GUCGUUGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 234142 0.67 0.839955
Target:  5'- cGCGGGCgCAGGcCCuGCAgcACGA-GCg -3'
miRNA:   3'- aCGCCCG-GUUCaGGuCGU--UGCUcCGa -5'
14437 5' -58.7 NC_003521.1 + 229243 0.66 0.862746
Target:  5'- cGCGGGCCGcggaGGUgCuuGCggUGAGGg- -3'
miRNA:   3'- aCGCCCGGU----UCAgGu-CGuuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 228986 0.66 0.847736
Target:  5'- cGCGGGCggcgCAGGaCCGGCAgcACGGaGCUa -3'
miRNA:   3'- aCGCCCG----GUUCaGGUCGU--UGCUcCGA- -5'
14437 5' -58.7 NC_003521.1 + 225862 0.68 0.780957
Target:  5'- gUGCGGGCaCAGGUgCCGGUGcuccaugcGCGucuGGCg -3'
miRNA:   3'- -ACGCCCG-GUUCA-GGUCGU--------UGCu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 224142 0.69 0.715897
Target:  5'- cGUGGGCCGAGUCgGGCcaggucAgGAGGa- -3'
miRNA:   3'- aCGCCCGGUUCAGgUCGu-----UgCUCCga -5'
14437 5' -58.7 NC_003521.1 + 224010 0.66 0.855335
Target:  5'- cUGCGGcagcGgCGGGcCCGGCGGuCGGGGCg -3'
miRNA:   3'- -ACGCC----CgGUUCaGGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 223796 0.66 0.855335
Target:  5'- cGUGGGCCg---CCAGaCGACG-GGCc -3'
miRNA:   3'- aCGCCCGGuucaGGUC-GUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 223318 0.66 0.883797
Target:  5'- cGcCGGGCCGGGaaccgccgugaCCGGCGGCGccGCUa -3'
miRNA:   3'- aC-GCCCGGUUCa----------GGUCGUUGCucCGA- -5'
14437 5' -58.7 NC_003521.1 + 222050 0.66 0.855335
Target:  5'- gGCGGGgggcaCCAGccGUCgCAGCAGCGAcccgucGGCg -3'
miRNA:   3'- aCGCCC-----GGUU--CAG-GUCGUUGCU------CCGa -5'
14437 5' -58.7 NC_003521.1 + 221802 0.71 0.617956
Target:  5'- gGCGGGCaUggGcUCCGuCGGCGGGGCg -3'
miRNA:   3'- aCGCCCG-GuuC-AGGUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 221344 0.67 0.839955
Target:  5'- aGCGGGCCAccugcaccuGG-CCGcGCAGCGAcauGGUc -3'
miRNA:   3'- aCGCCCGGU---------UCaGGU-CGUUGCU---CCGa -5'
14437 5' -58.7 NC_003521.1 + 219704 0.7 0.637698
Target:  5'- gGCGGGUCG---UCGGCAGCGgAGGCa -3'
miRNA:   3'- aCGCCCGGUucaGGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 219292 0.67 0.807141
Target:  5'- aGCGGGCCcaugAAGgCCAGCGuguuGGGCa -3'
miRNA:   3'- aCGCCCGG----UUCaGGUCGUugc-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 215436 0.68 0.740594
Target:  5'- cGCGGGUCugggagcaggguGUCCGGCGcCGAGGa- -3'
miRNA:   3'- aCGCCCGGuu----------CAGGUCGUuGCUCCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.