miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 34140 0.7 0.657423
Target:  5'- aGCaGGGCCAGGcCCAcGCGcACGaAGGCc -3'
miRNA:   3'- aCG-CCCGGUUCaGGU-CGU-UGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 34525 0.72 0.549511
Target:  5'- cGCGGGCCGAGacgcgCgAGCGGCGAcagaguucGGCc -3'
miRNA:   3'- aCGCCCGGUUCa----GgUCGUUGCU--------CCGa -5'
14437 5' -58.7 NC_003521.1 + 39441 0.72 0.549511
Target:  5'- cUGCcGGCCGAGcCCGGCGcCGAGGg- -3'
miRNA:   3'- -ACGcCCGGUUCaGGUCGUuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 145873 0.71 0.578644
Target:  5'- gGCGGGCggcgccgacgaCGAGgccgCCGGCGGCGGGaGCa -3'
miRNA:   3'- aCGCCCG-----------GUUCa---GGUCGUUGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 32385 0.71 0.592359
Target:  5'- cGCGuGGCCAGGUCCucgggcgugcgacacAGCAGCccguGGCg -3'
miRNA:   3'- aCGC-CCGGUUCAGG---------------UCGUUGcu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 131095 0.71 0.598254
Target:  5'- cGCGGGC----UCCGGaCGGCGGGGCg -3'
miRNA:   3'- aCGCCCGguucAGGUC-GUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 221802 0.71 0.617956
Target:  5'- gGCGGGCaUggGcUCCGuCGGCGGGGCg -3'
miRNA:   3'- aCGCCCG-GuuC-AGGUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 135217 0.7 0.637698
Target:  5'- aGUGGGCCucGUCCaccAGCAGC-AGGUg -3'
miRNA:   3'- aCGCCCGGuuCAGG---UCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 35218 0.7 0.647566
Target:  5'- cGCGGGUCGGaUCgAGCGuccuCGGGGCg -3'
miRNA:   3'- aCGCCCGGUUcAGgUCGUu---GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 86253 0.72 0.530342
Target:  5'- gUGCaGGGCgAAGUCgGcCGGCGAGGCg -3'
miRNA:   3'- -ACG-CCCGgUUCAGgUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 82774 0.73 0.511422
Target:  5'- gGCGGGCCGuGgagCaCAGgGACGAGGUg -3'
miRNA:   3'- aCGCCCGGUuCa--G-GUCgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 115744 0.73 0.511422
Target:  5'- uUGCGGGCCAGGUCCu----CGGGGa- -3'
miRNA:   3'- -ACGCCCGGUUCAGGucguuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 70304 0.77 0.299864
Target:  5'- aGCGGuG-CAGGUcgcCCAGCAGCGAGGCg -3'
miRNA:   3'- aCGCC-CgGUUCA---GGUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 154659 0.77 0.299864
Target:  5'- cGCuGGCCGAGgCCGGCAGCGAGacGCUg -3'
miRNA:   3'- aCGcCCGGUUCaGGUCGUUGCUC--CGA- -5'
14437 5' -58.7 NC_003521.1 + 5824 0.76 0.342139
Target:  5'- gGUGGuGCCGGGUcCCGGCGAcCGGGGCc -3'
miRNA:   3'- aCGCC-CGGUUCA-GGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 58756 0.76 0.342139
Target:  5'- cUGCGGGCUgAGGUCCAGCcacuGCaGGGCg -3'
miRNA:   3'- -ACGCCCGG-UUCAGGUCGu---UGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 52237 0.76 0.357155
Target:  5'- gGCGGGCUAcAGUUgGGCAGCGgcAGGCg -3'
miRNA:   3'- aCGCCCGGU-UCAGgUCGUUGC--UCCGa -5'
14437 5' -58.7 NC_003521.1 + 431 0.73 0.483588
Target:  5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3'
miRNA:   3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 87775 0.73 0.492788
Target:  5'- cGCaGGCCAGGgCCAGguGCuGAGGCc -3'
miRNA:   3'- aCGcCCGGUUCaGGUCguUG-CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 142903 0.73 0.502067
Target:  5'- aGCGGcGCCAucAG-CCGGCGACGucGGCg -3'
miRNA:   3'- aCGCC-CGGU--UCaGGUCGUUGCu-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.