miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 107175 0.85 0.093631
Target:  5'- gGCGGGgCAGGUCCAGCAGCagcagcuucuuGAGGCUg -3'
miRNA:   3'- aCGCCCgGUUCAGGUCGUUG-----------CUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 17162 0.71 0.608096
Target:  5'- cGCGaGGCCGAGgcgcagcgCUGGCAGCuGGGCa -3'
miRNA:   3'- aCGC-CCGGUUCa-------GGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 195357 0.71 0.617956
Target:  5'- gGUGGGCCGGGUgaaggugacgcCCGagGACGAGGCg -3'
miRNA:   3'- aCGCCCGGUUCA-----------GGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 223318 0.66 0.883797
Target:  5'- cGcCGGGCCGGGaaccgccgugaCCGGCGGCGccGCUa -3'
miRNA:   3'- aC-GCCCGGUUCa----------GGUCGUUGCucCGA- -5'
14437 5' -58.7 NC_003521.1 + 155506 0.76 0.357155
Target:  5'- cGCGGGCCAAGgcuggagcgaCGGCGACGuGGUUc -3'
miRNA:   3'- aCGCCCGGUUCag--------GUCGUUGCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 76297 0.75 0.380533
Target:  5'- cUGCGaGuCCGGGUCCGGCAGCgGAGGUg -3'
miRNA:   3'- -ACGCcC-GGUUCAGGUCGUUG-CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 40753 0.73 0.483588
Target:  5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3'
miRNA:   3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 86698 0.73 0.492788
Target:  5'- gGCGGGCCGcGg-CGGCGacgACGAGGCg -3'
miRNA:   3'- aCGCCCGGUuCagGUCGU---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 119966 0.72 0.530342
Target:  5'- cGCGgccgccucaaGGCCGAGUCCAGCAuggcaccCGAGGa- -3'
miRNA:   3'- aCGC----------CCGGUUCAGGUCGUu------GCUCCga -5'
14437 5' -58.7 NC_003521.1 + 100757 0.71 0.578644
Target:  5'- aGCuGGGCCuGGcgcacUCguGCAACGAGGCc -3'
miRNA:   3'- aCG-CCCGGuUC-----AGguCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 153174 0.72 0.549511
Target:  5'- cGUGGGCUgcGccUCCAGCcuguGCGAGGCc -3'
miRNA:   3'- aCGCCCGGuuC--AGGUCGu---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 236465 0.73 0.502067
Target:  5'- cGCGGGCCGcgaugAGcgaaccgCCGGCGGCGGuGGCg -3'
miRNA:   3'- aCGCCCGGU-----UCa------GGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 98589 0.8 0.192721
Target:  5'- aGCGGGCCcgcGAG-CgCAGCGACGAGGCc -3'
miRNA:   3'- aCGCCCGG---UUCaG-GUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 113849 0.72 0.56889
Target:  5'- aGCGGGgCGg--CCGGCGACGAcGGCg -3'
miRNA:   3'- aCGCCCgGUucaGGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 46411 0.78 0.261742
Target:  5'- cGCGGGCCAGGaagCGGCGACG-GGCg -3'
miRNA:   3'- aCGCCCGGUUCag-GUCGUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 44360 0.73 0.501135
Target:  5'- -aCGGGCCGAGUgCCAGCGgagguucGCGcGGCa -3'
miRNA:   3'- acGCCCGGUUCA-GGUCGU-------UGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 96701 0.71 0.578644
Target:  5'- gGCGcaccucguccaGGCCGcggcGGUCCAGCAGCcgcauGAGGCa -3'
miRNA:   3'- aCGC-----------CCGGU----UCAGGUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 95727 0.71 0.617956
Target:  5'- --aGGcGCCAGGUCCAGCAG-GcGGCUg -3'
miRNA:   3'- acgCC-CGGUUCAGGUCGUUgCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 6478 0.77 0.320479
Target:  5'- -aCGGGaggCAGGUCCGGCAGCGgAGGCg -3'
miRNA:   3'- acGCCCg--GUUCAGGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 207045 0.74 0.430254
Target:  5'- cGCGGGCagccCAAGUUCAGCAGCcucuGGCg -3'
miRNA:   3'- aCGCCCG----GUUCAGGUCGUUGcu--CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.