miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 113170 0.66 0.869963
Target:  5'- cGC-GGCCAAGaUgGGCcGCGAGGUg -3'
miRNA:   3'- aCGcCCGGUUCaGgUCGuUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 49854 0.66 0.883797
Target:  5'- cGCucGGCCucGUCCAGCAugcucAUGAuGGCg -3'
miRNA:   3'- aCGc-CCGGuuCAGGUCGU-----UGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 38309 0.66 0.869963
Target:  5'- uUGCaGGCCGAGgcaCGGCcaagGGCGAuGGCg -3'
miRNA:   3'- -ACGcCCGGUUCag-GUCG----UUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 200312 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 228986 0.66 0.847736
Target:  5'- cGCGGGCggcgCAGGaCCGGCAgcACGGaGCUa -3'
miRNA:   3'- aCGCCCG----GUUCaGGUCGU--UGCUcCGA- -5'
14437 5' -58.7 NC_003521.1 + 113120 0.66 0.847736
Target:  5'- -uCGGGCCAGGUgC-GCGACGAuGuGCUc -3'
miRNA:   3'- acGCCCGGUUCAgGuCGUUGCU-C-CGA- -5'
14437 5' -58.7 NC_003521.1 + 155450 0.66 0.883797
Target:  5'- cGCuGGgCGAGUCgCAGCAGCccgucGAGGUc -3'
miRNA:   3'- aCGcCCgGUUCAG-GUCGUUG-----CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 152836 0.66 0.883797
Target:  5'- cGCGcGCCcccagauucaccGAGUCCucGCGccGCGAGGCg -3'
miRNA:   3'- aCGCcCGG------------UUCAGGu-CGU--UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 129223 0.66 0.855335
Target:  5'- gGUGGGC--AGUCCGGCGccgcuggccacGCGcGGCa -3'
miRNA:   3'- aCGCCCGguUCAGGUCGU-----------UGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 27473 0.66 0.847736
Target:  5'- gGCuGGCCAGGUCC-GUcAUGuGGCg -3'
miRNA:   3'- aCGcCCGGUUCAGGuCGuUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 223318 0.66 0.883797
Target:  5'- cGcCGGGCCGGGaaccgccgugaCCGGCGGCGccGCUa -3'
miRNA:   3'- aC-GCCCGGUUCa----------GGUCGUUGCucCGA- -5'
14437 5' -58.7 NC_003521.1 + 105805 0.66 0.862746
Target:  5'- cGCaGGCCAcGGUgcCCGGCAGCcagaugguGGGGCg -3'
miRNA:   3'- aCGcCCGGU-UCA--GGUCGUUG--------CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 208610 0.66 0.869963
Target:  5'- uUGCGGcgGCCAuagccAGUCaccGCggUGAGGCa -3'
miRNA:   3'- -ACGCC--CGGU-----UCAGgu-CGuuGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 193225 0.66 0.86925
Target:  5'- gGC-GGCCAAGUCgGGCGGgagcgccUGGGGUa -3'
miRNA:   3'- aCGcCCGGUUCAGgUCGUU-------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 56248 0.66 0.876982
Target:  5'- aUGUcgGGGCUGAGgcaggCCGGCAGgcaGAGGUUg -3'
miRNA:   3'- -ACG--CCCGGUUCa----GGUCGUUg--CUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 224010 0.66 0.855335
Target:  5'- cUGCGGcagcGgCGGGcCCGGCGGuCGGGGCg -3'
miRNA:   3'- -ACGCC----CgGUUCaGGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 223796 0.66 0.855335
Target:  5'- cGUGGGCCg---CCAGaCGACG-GGCc -3'
miRNA:   3'- aCGCCCGGuucaGGUC-GUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 124208 0.66 0.883797
Target:  5'- aGCGGGCCcuuucuGG-CCcGCGACcGGGCc -3'
miRNA:   3'- aCGCCCGGu-----UCaGGuCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 130084 0.66 0.883125
Target:  5'- cGCuGGCCGAGUggaacugCCAGCuGCcGGGCc -3'
miRNA:   3'- aCGcCCGGUUCA-------GGUCGuUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 168998 0.66 0.847736
Target:  5'- cGCGGGa--GG-CgGGCGACGGGGCc -3'
miRNA:   3'- aCGCCCgguUCaGgUCGUUGCUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.