Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 82707 | 1.08 | 0.002693 |
Target: 5'- aUGCGGGCCAAGUCCAGCAACGAGGCUg -3' miRNA: 3'- -ACGCCCGGUUCAGGUCGUUGCUCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 107175 | 0.85 | 0.093631 |
Target: 5'- gGCGGGgCAGGUCCAGCAGCagcagcuucuuGAGGCUg -3' miRNA: 3'- aCGCCCgGUUCAGGUCGUUG-----------CUCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 98589 | 0.8 | 0.192721 |
Target: 5'- aGCGGGCCcgcGAG-CgCAGCGACGAGGCc -3' miRNA: 3'- aCGCCCGG---UUCaG-GUCGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 46411 | 0.78 | 0.261742 |
Target: 5'- cGCGGGCCAGGaagCGGCGACG-GGCg -3' miRNA: 3'- aCGCCCGGUUCag-GUCGUUGCuCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 70304 | 0.77 | 0.299864 |
Target: 5'- aGCGGuG-CAGGUcgcCCAGCAGCGAGGCg -3' miRNA: 3'- aCGCC-CgGUUCA---GGUCGUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 154659 | 0.77 | 0.299864 |
Target: 5'- cGCuGGCCGAGgCCGGCAGCGAGacGCUg -3' miRNA: 3'- aCGcCCGGUUCaGGUCGUUGCUC--CGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 6478 | 0.77 | 0.320479 |
Target: 5'- -aCGGGaggCAGGUCCGGCAGCGgAGGCg -3' miRNA: 3'- acGCCCg--GUUCAGGUCGUUGC-UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 58756 | 0.76 | 0.342139 |
Target: 5'- cUGCGGGCUgAGGUCCAGCcacuGCaGGGCg -3' miRNA: 3'- -ACGCCCGG-UUCAGGUCGu---UGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 52237 | 0.76 | 0.357155 |
Target: 5'- gGCGGGCUAcAGUUgGGCAGCGgcAGGCg -3' miRNA: 3'- aCGCCCGGU-UCAGgUCGUUGC--UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 155506 | 0.76 | 0.357155 |
Target: 5'- cGCGGGCCAAGgcuggagcgaCGGCGACGuGGUUc -3' miRNA: 3'- aCGCCCGGUUCag--------GUCGUUGCuCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 5824 | 0.76 | 0.342139 |
Target: 5'- gGUGGuGCCGGGUcCCGGCGAcCGGGGCc -3' miRNA: 3'- aCGCC-CGGUUCA-GGUCGUU-GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 76297 | 0.75 | 0.380533 |
Target: 5'- cUGCGaGuCCGGGUCCGGCAGCgGAGGUg -3' miRNA: 3'- -ACGCcC-GGUUCAGGUCGUUG-CUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 207045 | 0.74 | 0.430254 |
Target: 5'- cGCGGGCagccCAAGUUCAGCAGCcucuGGCg -3' miRNA: 3'- aCGCCCG----GUUCAGGUCGUUGcu--CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 86698 | 0.73 | 0.492788 |
Target: 5'- gGCGGGCCGcGg-CGGCGacgACGAGGCg -3' miRNA: 3'- aCGCCCGGUuCagGUCGU---UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 40753 | 0.73 | 0.483588 |
Target: 5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3' miRNA: 3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 115744 | 0.73 | 0.511422 |
Target: 5'- uUGCGGGCCAGGUCCu----CGGGGa- -3' miRNA: 3'- -ACGCCCGGUUCAGGucguuGCUCCga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 142903 | 0.73 | 0.502067 |
Target: 5'- aGCGGcGCCAucAG-CCGGCGACGucGGCg -3' miRNA: 3'- aCGCC-CGGU--UCaGGUCGUUGCu-CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 87775 | 0.73 | 0.492788 |
Target: 5'- cGCaGGCCAGGgCCAGguGCuGAGGCc -3' miRNA: 3'- aCGcCCGGUUCaGGUCguUG-CUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 431 | 0.73 | 0.483588 |
Target: 5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3' miRNA: 3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 82774 | 0.73 | 0.511422 |
Target: 5'- gGCGGGCCGuGgagCaCAGgGACGAGGUg -3' miRNA: 3'- aCGCCCGGUuCa--G-GUCgUUGCUCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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