miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 84 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 431 0.73 0.483588
Target:  5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3'
miRNA:   3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 5407 0.67 0.839955
Target:  5'- cGgGGGCCucGcCCGagGACGAGGCg -3'
miRNA:   3'- aCgCCCGGuuCaGGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 5824 0.76 0.342139
Target:  5'- gGUGGuGCCGGGUcCCGGCGAcCGGGGCc -3'
miRNA:   3'- aCGCC-CGGUUCA-GGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 6478 0.77 0.320479
Target:  5'- -aCGGGaggCAGGUCCGGCAGCGgAGGCg -3'
miRNA:   3'- acGCCCg--GUUCAGGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 6534 0.66 0.883125
Target:  5'- gGCGGuCUgcGUCCcgccccagggcagGGCGACGAGGUg -3'
miRNA:   3'- aCGCCcGGuuCAGG-------------UCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 7972 0.67 0.815584
Target:  5'- cGC-GGCCGggagGGUCCgcGGCGGCGGGGg- -3'
miRNA:   3'- aCGcCCGGU----UCAGG--UCGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 13084 0.7 0.68685
Target:  5'- aGCGGaCCAAGUCCgaggggggaAGCGGCacaGAGGCc -3'
miRNA:   3'- aCGCCcGGUUCAGG---------UCGUUG---CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 17162 0.71 0.608096
Target:  5'- cGCGaGGCCGAGgcgcagcgCUGGCAGCuGGGCa -3'
miRNA:   3'- aCGC-CCGGUUCa-------GGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 17641 0.71 0.627825
Target:  5'- cUGCGGaGCUAcGUacgCCAGCAcCGGGGCa -3'
miRNA:   3'- -ACGCC-CGGUuCA---GGUCGUuGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 18978 0.69 0.70627
Target:  5'- aGgGGGUCGAGgacgcgCCGcGCGACGAGGg- -3'
miRNA:   3'- aCgCCCGGUUCa-----GGU-CGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 27005 0.68 0.771969
Target:  5'- aGCGGGCCA----CGGCAucgaaacCGAGGCUc -3'
miRNA:   3'- aCGCCCGGUucagGUCGUu------GCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 27473 0.66 0.847736
Target:  5'- gGCuGGCCAGGUCC-GUcAUGuGGCg -3'
miRNA:   3'- aCGcCCGGUUCAGGuCGuUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 32385 0.71 0.592359
Target:  5'- cGCGuGGCCAGGUCCucgggcgugcgacacAGCAGCccguGGCg -3'
miRNA:   3'- aCGC-CCGGUUCAGG---------------UCGUUGcu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 33125 0.68 0.78982
Target:  5'- aGCGGGCCuucUCCAGCAcgccgaugACGAaGCc -3'
miRNA:   3'- aCGCCCGGuucAGGUCGU--------UGCUcCGa -5'
14437 5' -58.7 NC_003521.1 + 34140 0.7 0.657423
Target:  5'- aGCaGGGCCAGGcCCAcGCGcACGaAGGCc -3'
miRNA:   3'- aCG-CCCGGUUCaGGU-CGU-UGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 34177 0.69 0.696585
Target:  5'- cGCGGGCCAAcuuGaCCAGCuuauCGuGGCc -3'
miRNA:   3'- aCGCCCGGUU---CaGGUCGuu--GCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 34525 0.72 0.549511
Target:  5'- cGCGGGCCGAGacgcgCgAGCGGCGAcagaguucGGCc -3'
miRNA:   3'- aCGCCCGGUUCa----GgUCGUUGCU--------CCGa -5'
14437 5' -58.7 NC_003521.1 + 34883 0.68 0.762866
Target:  5'- cUGCgaGGGCC-AGcCCAGCGagACGcAGGCg -3'
miRNA:   3'- -ACG--CCCGGuUCaGGUCGU--UGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 34980 0.68 0.762866
Target:  5'- cGCGGGCgCAgaaGGUCUccggGGcCAGCGAGcGCUu -3'
miRNA:   3'- aCGCCCG-GU---UCAGG----UC-GUUGCUC-CGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.