miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 105805 0.66 0.862746
Target:  5'- cGCaGGCCAcGGUgcCCGGCAGCcagaugguGGGGCg -3'
miRNA:   3'- aCGcCCGGU-UCA--GGUCGUUG--------CUCCGa -5'
14437 5' -58.7 NC_003521.1 + 229243 0.66 0.862746
Target:  5'- cGCGGGCCGcggaGGUgCuuGCggUGAGGg- -3'
miRNA:   3'- aCGCCCGGU----UCAgGu-CGuuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 99825 0.66 0.862746
Target:  5'- gUGCuGGGCCuuguugcuggaGAGggCCAGCucuACGuGGCUc -3'
miRNA:   3'- -ACG-CCCGG-----------UUCa-GGUCGu--UGCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 127679 0.66 0.862746
Target:  5'- aGCaGGCggCGGGUCCAG-AGCGAGaGCa -3'
miRNA:   3'- aCGcCCG--GUUCAGGUCgUUGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 182965 0.66 0.862746
Target:  5'- gGCGaauCCGuGUCUAGCAGCGAcGGCg -3'
miRNA:   3'- aCGCcc-GGUuCAGGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 240633 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 200312 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 84 0.66 0.857578
Target:  5'- gGCGGGCCGgccGGUcggacguguuucgggCCGGCGggucgucGCGGGGaCUg -3'
miRNA:   3'- aCGCCCGGU---UCA---------------GGUCGU-------UGCUCC-GA- -5'
14437 5' -58.7 NC_003521.1 + 222050 0.66 0.855335
Target:  5'- gGCGGGgggcaCCAGccGUCgCAGCAGCGAcccgucGGCg -3'
miRNA:   3'- aCGCCC-----GGUU--CAG-GUCGUUGCU------CCGa -5'
14437 5' -58.7 NC_003521.1 + 201389 0.66 0.855335
Target:  5'- cGcCGGGCUcGG-CCGGCAGCGGcauuuucucGGCg -3'
miRNA:   3'- aC-GCCCGGuUCaGGUCGUUGCU---------CCGa -5'
14437 5' -58.7 NC_003521.1 + 129223 0.66 0.855335
Target:  5'- gGUGGGC--AGUCCGGCGccgcuggccacGCGcGGCa -3'
miRNA:   3'- aCGCCCGguUCAGGUCGU-----------UGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 224010 0.66 0.855335
Target:  5'- cUGCGGcagcGgCGGGcCCGGCGGuCGGGGCg -3'
miRNA:   3'- -ACGCC----CgGUUCaGGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 223796 0.66 0.855335
Target:  5'- cGUGGGCCg---CCAGaCGACG-GGCc -3'
miRNA:   3'- aCGCCCGGuucaGGUC-GUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 113120 0.66 0.847736
Target:  5'- -uCGGGCCAGGUgC-GCGACGAuGuGCUc -3'
miRNA:   3'- acGCCCGGUUCAgGuCGUUGCU-C-CGA- -5'
14437 5' -58.7 NC_003521.1 + 228986 0.66 0.847736
Target:  5'- cGCGGGCggcgCAGGaCCGGCAgcACGGaGCUa -3'
miRNA:   3'- aCGCCCG----GUUCaGGUCGU--UGCUcCGA- -5'
14437 5' -58.7 NC_003521.1 + 168998 0.66 0.847736
Target:  5'- cGCGGGa--GG-CgGGCGACGGGGCc -3'
miRNA:   3'- aCGCCCgguUCaGgUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 27473 0.66 0.847736
Target:  5'- gGCuGGCCAGGUCC-GUcAUGuGGCg -3'
miRNA:   3'- aCGcCCGGUUCAGGuCGuUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 111112 0.66 0.847736
Target:  5'- cGaCGGGCCGcGgCCGGCAgaaGCG-GGCg -3'
miRNA:   3'- aC-GCCCGGUuCaGGUCGU---UGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 188492 0.66 0.847736
Target:  5'- cGUGGGCCuGGGUCCGccGCcgagauACGAGGa- -3'
miRNA:   3'- aCGCCCGG-UUCAGGU--CGu-----UGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 99725 0.66 0.847736
Target:  5'- cGCGGGCCGcAGUagAGCAGCcacagGAGGg- -3'
miRNA:   3'- aCGCCCGGU-UCAggUCGUUG-----CUCCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.