miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 3' -62 NC_003521.1 + 50006 0.69 0.621979
Target:  5'- aCCgCGCCUGUCGUCG-GCuccuguAGCGCAgCAg -3'
miRNA:   3'- -GG-GCGGGCAGCAGCgCGc-----UCGCGU-GU- -5'
14446 3' -62 NC_003521.1 + 52561 0.69 0.650215
Target:  5'- uUCCGCagacgCCGgcagaagaCGUCGCGCGGGCaGCugGu -3'
miRNA:   3'- -GGGCG-----GGCa-------GCAGCGCGCUCG-CGugU- -5'
14446 3' -62 NC_003521.1 + 56127 0.66 0.810823
Target:  5'- gCCCaGCaCCa-CGUCGgGCGAGUGCGg- -3'
miRNA:   3'- -GGG-CG-GGcaGCAGCgCGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 59096 0.7 0.583514
Target:  5'- gCCGCuuGgccagCGUgCGCGCGuccaucaugucgaAGCGCACGg -3'
miRNA:   3'- gGGCGggCa----GCA-GCGCGC-------------UCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 62546 0.7 0.584448
Target:  5'- aCCCGuCCCGcUCGuUCGCGCGcGCGgAa- -3'
miRNA:   3'- -GGGC-GGGC-AGC-AGCGCGCuCGCgUgu -5'
14446 3' -62 NC_003521.1 + 66358 0.67 0.733536
Target:  5'- uCCCGCUCG-CGUgGCcggcgGCGAGCaGCgACAc -3'
miRNA:   3'- -GGGCGGGCaGCAgCG-----CGCUCG-CG-UGU- -5'
14446 3' -62 NC_003521.1 + 69351 0.72 0.458661
Target:  5'- aCUCGCCCGUCugacaGCGCGAGCacaGCAg -3'
miRNA:   3'- -GGGCGGGCAGcag--CGCGCUCGcg-UGU- -5'
14446 3' -62 NC_003521.1 + 69966 0.66 0.780112
Target:  5'- gCCCGCCCccgcggaGaagccgacgcgcgucUCGUCGUgcagucccaGCGAGCGCAg- -3'
miRNA:   3'- -GGGCGGG-------C---------------AGCAGCG---------CGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 71379 0.75 0.307779
Target:  5'- aCCCGCcgccgccgacgCCGUCGUcCGCGUGAGCGagGCGg -3'
miRNA:   3'- -GGGCG-----------GGCAGCA-GCGCGCUCGCg-UGU- -5'
14446 3' -62 NC_003521.1 + 73561 0.67 0.751415
Target:  5'- aCCaCCUGgcCGUgGUGCGGGCGCugGu -3'
miRNA:   3'- gGGcGGGCa-GCAgCGCGCUCGCGugU- -5'
14446 3' -62 NC_003521.1 + 77053 0.66 0.801874
Target:  5'- gCCGCuaCCGUUGUUGCcgccgccGUGAGCGC-CGc -3'
miRNA:   3'- gGGCG--GGCAGCAGCG-------CGCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 83124 0.66 0.768939
Target:  5'- uUCUGCUCGaucUCGaagacgaGCGCGuGCGCGCAu -3'
miRNA:   3'- -GGGCGGGC---AGCag-----CGCGCuCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 83682 0.69 0.612572
Target:  5'- cCUCGCgcgugaCGUUGUggaCGCGCGAGCGgGCGu -3'
miRNA:   3'- -GGGCGg-----GCAGCA---GCGCGCUCGCgUGU- -5'
14446 3' -62 NC_003521.1 + 84738 0.66 0.810823
Target:  5'- aCUGCCguCGUCGUCuuGCuCGGGCGCGg- -3'
miRNA:   3'- gGGCGG--GCAGCAG--CGcGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 84879 0.68 0.696942
Target:  5'- gCCGCCCGguccggGUgGCGCGAGUaggccgucaGCGCc -3'
miRNA:   3'- gGGCGGGCag----CAgCGCGCUCG---------CGUGu -5'
14446 3' -62 NC_003521.1 + 85437 0.67 0.733536
Target:  5'- cCCCGCCggccuCGUCGUcCGCGCcGGCGa--- -3'
miRNA:   3'- -GGGCGG-----GCAGCA-GCGCGcUCGCgugu -5'
14446 3' -62 NC_003521.1 + 87710 0.68 0.696942
Target:  5'- gCCGCCUGcugcCGUCGCGCGcgcccggcGGCGUg-- -3'
miRNA:   3'- gGGCGGGCa---GCAGCGCGC--------UCGCGugu -5'
14446 3' -62 NC_003521.1 + 87787 0.66 0.810823
Target:  5'- gCCGCCuCGUCGgucUCGgGCGgccugggccaggAGCGgACAu -3'
miRNA:   3'- gGGCGG-GCAGC---AGCgCGC------------UCGCgUGU- -5'
14446 3' -62 NC_003521.1 + 88842 0.66 0.794434
Target:  5'- gCCG-CCGUCGUagcacaGCaCGGGCGUGCGa -3'
miRNA:   3'- gGGCgGGCAGCAg-----CGcGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 89537 0.67 0.733536
Target:  5'- aCCGCgCGUCGcggUCG-GCGuaagcgccguAGCGCACAc -3'
miRNA:   3'- gGGCGgGCAGC---AGCgCGC----------UCGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.