miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 3' -62 NC_003521.1 + 78 0.68 0.668989
Target:  5'- -gCGCgUGUCGcUUGcCGCGGGCGUGCAg -3'
miRNA:   3'- ggGCGgGCAGC-AGC-GCGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 3436 0.69 0.631392
Target:  5'- cCCCGCCaUGcCGaCGC-CGAGgGCACAg -3'
miRNA:   3'- -GGGCGG-GCaGCaGCGcGCUCgCGUGU- -5'
14446 3' -62 NC_003521.1 + 6676 0.66 0.810016
Target:  5'- uCCCGCUCGUgcugcagggccugCGcC-CGCGAGCGCuGCu -3'
miRNA:   3'- -GGGCGGGCA-------------GCaGcGCGCUCGCG-UGu -5'
14446 3' -62 NC_003521.1 + 14531 0.67 0.751415
Target:  5'- aCCaCGCCCGagggcUCGUaCGCcacggcCGAGCGCAUc -3'
miRNA:   3'- -GG-GCGGGC-----AGCA-GCGc-----GCUCGCGUGu -5'
14446 3' -62 NC_003521.1 + 15298 0.68 0.696942
Target:  5'- aCgCGUUCGUCGaCGCGCGAcgGCGC-CGa -3'
miRNA:   3'- -GgGCGGGCAGCaGCGCGCU--CGCGuGU- -5'
14446 3' -62 NC_003521.1 + 16039 0.7 0.565835
Target:  5'- uCCCGCaCGaCGUgGUGCGGGCGCugcuGCAc -3'
miRNA:   3'- -GGGCGgGCaGCAgCGCGCUCGCG----UGU- -5'
14446 3' -62 NC_003521.1 + 16095 0.7 0.547379
Target:  5'- gCCGCCUG-CGUCG-GCGAGCacCACGg -3'
miRNA:   3'- gGGCGGGCaGCAGCgCGCUCGc-GUGU- -5'
14446 3' -62 NC_003521.1 + 21439 0.68 0.659611
Target:  5'- uCgUGCCCGUCGccugucucuUCGCGCuucacGGCGUGCAg -3'
miRNA:   3'- -GgGCGGGCAGC---------AGCGCGc----UCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 23568 0.66 0.809208
Target:  5'- cCUCGUCCGUCaugguggugggCGCGgGGGUGCugGc -3'
miRNA:   3'- -GGGCGGGCAGca---------GCGCgCUCGCGugU- -5'
14446 3' -62 NC_003521.1 + 24533 0.68 0.678341
Target:  5'- cCCCGCCaaCGUCGUcCGCuccaCGAGCugGCGCu -3'
miRNA:   3'- -GGGCGG--GCAGCA-GCGc---GCUCG--CGUGu -5'
14446 3' -62 NC_003521.1 + 26008 0.67 0.760225
Target:  5'- aCCG-CCGUCGcCGCGCccGGCGCcCGa -3'
miRNA:   3'- gGGCgGGCAGCaGCGCGc-UCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 30167 0.68 0.678341
Target:  5'- -gCGUCacgCGUUGUCGCaUGAGCGCGCGg -3'
miRNA:   3'- ggGCGG---GCAGCAGCGcGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 31263 0.7 0.556585
Target:  5'- aCCCGCcgccaCCGUCGcCGCcaccccgcCGGGCGCAUAa -3'
miRNA:   3'- -GGGCG-----GGCAGCaGCGc-------GCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 36530 0.73 0.417249
Target:  5'- aCCCGCCgGUCGUCGgcaugccggucaUGuCGAGCGC-CGu -3'
miRNA:   3'- -GGGCGGgCAGCAGC------------GC-GCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 36956 0.68 0.706177
Target:  5'- -aCGCUgGUCGUCGCagcggaGCGGGUGCuCGg -3'
miRNA:   3'- ggGCGGgCAGCAGCG------CGCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 39635 0.67 0.724481
Target:  5'- gCCgGCCUcUCGUUGCGCccacuuGCGCAUg -3'
miRNA:   3'- -GGgCGGGcAGCAGCGCGcu----CGCGUGu -5'
14446 3' -62 NC_003521.1 + 40400 0.68 0.668989
Target:  5'- -gCGCgUGUCGcUUGcCGCGGGCGUGCAg -3'
miRNA:   3'- ggGCGgGCAGC-AGC-GCGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 42996 0.67 0.733536
Target:  5'- aCCUGCagaCGgccgUGUCGCGCGucUGCACGc -3'
miRNA:   3'- -GGGCGg--GCa---GCAGCGCGCucGCGUGU- -5'
14446 3' -62 NC_003521.1 + 44171 0.66 0.802694
Target:  5'- gCUgGCgCCGUCGguacucCGCGaGAGCGCAgAg -3'
miRNA:   3'- -GGgCG-GGCAGCa-----GCGCgCUCGCGUgU- -5'
14446 3' -62 NC_003521.1 + 45052 0.66 0.768072
Target:  5'- gCCGCgCCGcUCGUgccaggcaaCGCGCGuccugcgugagguGGCGCAUAc -3'
miRNA:   3'- gGGCG-GGC-AGCA---------GCGCGC-------------UCGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.