miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 3' -62 NC_003521.1 + 90048 1.09 0.001747
Target:  5'- gCCCGCCCGUCGUCGCGCGAGCGCACAc -3'
miRNA:   3'- -GGGCGGGCAGCAGCGCGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 150423 0.77 0.237063
Target:  5'- aCCCGUCUGUCG-CGUGCaggaGAGCGCGCc -3'
miRNA:   3'- -GGGCGGGCAGCaGCGCG----CUCGCGUGu -5'
14446 3' -62 NC_003521.1 + 224787 0.76 0.282553
Target:  5'- gCCCGCaCCa-CGUCGUGCGGGaCGCGCGu -3'
miRNA:   3'- -GGGCG-GGcaGCAGCGCGCUC-GCGUGU- -5'
14446 3' -62 NC_003521.1 + 71379 0.75 0.307779
Target:  5'- aCCCGCcgccgccgacgCCGUCGUcCGCGUGAGCGagGCGg -3'
miRNA:   3'- -GGGCG-----------GGCAGCA-GCGCGCUCGCg-UGU- -5'
14446 3' -62 NC_003521.1 + 135462 0.74 0.348776
Target:  5'- gUCCGCCCccCGUCGaCGCGgacgcaguGGCGCGCAc -3'
miRNA:   3'- -GGGCGGGcaGCAGC-GCGC--------UCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 118186 0.74 0.355977
Target:  5'- gCCCGCCggcaaaGUCGgggcCGC-CGAGCGCGCGg -3'
miRNA:   3'- -GGGCGGg-----CAGCa---GCGcGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 155387 0.74 0.362546
Target:  5'- aCCUGCCCGUCuaUUGCGUggucaacGAGCGCGCc -3'
miRNA:   3'- -GGGCGGGCAGc-AGCGCG-------CUCGCGUGu -5'
14446 3' -62 NC_003521.1 + 139113 0.74 0.370689
Target:  5'- cCCCGCCgCG-CaUCGUGCuGAGCGUACAg -3'
miRNA:   3'- -GGGCGG-GCaGcAGCGCG-CUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 129719 0.73 0.393522
Target:  5'- gCCgGCCgCGgccCGUCGaCGCGAGCGCGu- -3'
miRNA:   3'- -GGgCGG-GCa--GCAGC-GCGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 153549 0.73 0.409243
Target:  5'- aCCUcggGCCCGUUGgccaCGCGCacGGCGCACAg -3'
miRNA:   3'- -GGG---CGGGCAGCa---GCGCGc-UCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 150762 0.73 0.409243
Target:  5'- gCCCGCCCGcgugugCGcUCGCGCGAcgacgggcGgGCGCGa -3'
miRNA:   3'- -GGGCGGGCa-----GC-AGCGCGCU--------CgCGUGU- -5'
14446 3' -62 NC_003521.1 + 142314 0.73 0.417249
Target:  5'- gCCgCGCgCGUCGUCGCaacUGGGUGCGCGa -3'
miRNA:   3'- -GG-GCGgGCAGCAGCGc--GCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 89859 0.73 0.417249
Target:  5'- gCCGCCagcgccgCGUCGCGCGAcUGCACGa -3'
miRNA:   3'- gGGCGGgca----GCAGCGCGCUcGCGUGU- -5'
14446 3' -62 NC_003521.1 + 36530 0.73 0.417249
Target:  5'- aCCCGCCgGUCGUCGgcaugccggucaUGuCGAGCGC-CGu -3'
miRNA:   3'- -GGGCGGgCAGCAGC------------GC-GCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 92207 0.72 0.441828
Target:  5'- gCCGCCCGgcCG-CGCGaCGAGCGCu-- -3'
miRNA:   3'- gGGCGGGCa-GCaGCGC-GCUCGCGugu -5'
14446 3' -62 NC_003521.1 + 163091 0.72 0.450201
Target:  5'- gCCgGCCCGUCcUCGgGCGccAGCGcCACGa -3'
miRNA:   3'- -GGgCGGGCAGcAGCgCGC--UCGC-GUGU- -5'
14446 3' -62 NC_003521.1 + 211094 0.72 0.450201
Target:  5'- uCCUGCCUGUcCGUCGCGcCGAG-GCuCAg -3'
miRNA:   3'- -GGGCGGGCA-GCAGCGC-GCUCgCGuGU- -5'
14446 3' -62 NC_003521.1 + 69351 0.72 0.458661
Target:  5'- aCUCGCCCGUCugacaGCGCGAGCacaGCAg -3'
miRNA:   3'- -GGGCGGGCAGcag--CGCGCUCGcg-UGU- -5'
14446 3' -62 NC_003521.1 + 102315 0.71 0.492432
Target:  5'- gUCCGCggcaucgUCGUCGUgCGCGUGGGCGC-CGa -3'
miRNA:   3'- -GGGCG-------GGCAGCA-GCGCGCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 126969 0.71 0.493314
Target:  5'- aCCCGCgCCGUCGUCGC-CG-GC-CGCc -3'
miRNA:   3'- -GGGCG-GGCAGCAGCGcGCuCGcGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.